Information for 13-ARCGMTCAAT (Motif 42)

C G T A C T G A A G T C C A T G G T A C A C G T A G T C C G T A C G T A A C G T
Reverse Opposite:
C G T A A C G T A C G T A C T G C G T A A C T G G T A C A C T G A G C T A C G T
p-value:1e-7
log p-value:-1.761e+01
Information Content per bp:1.901
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.66%
Number of Background Sequences with motif5.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets50.2 +/- 21.1bp
Average Position of motif in Background48.5 +/- 22.2bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer

Match Rank:1
Score:0.73
Offset:0
Orientation:forward strand
Alignment:ARCGMTCAAT
HNRAATCAAT
 C G T A C T G A A G T C C A T G G T A C A C G T A G T C C G T A C G T A A C G T
G C T A A C T G T C G A C T G A C T G A A C G T T A G C C T G A C G T A C G A T

HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer

Match Rank:2
Score:0.69
Offset:2
Orientation:reverse strand
Alignment:ARCGMTCAAT--
--DGATCRATAN
 C G T A C T G A A G T C C A T G G T A C A C G T A G T C C G T A C G T A A C G T A C G T A C G T
A C G T A C G T C T A G C T A G C T G A A C G T A G T C C T A G C G T A A C G T G T C A G A T C

PB0188.1_Tcf7l2_2/Jaspar

Match Rank:3
Score:0.68
Offset:0
Orientation:forward strand
Alignment:ARCGMTCAAT------
GAAGATCAATCACTAA
 C G T A C T G A A G T C C A T G G T A C A C G T A G T C C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
T A C G C T A G T C G A T A C G G C T A G C A T A G T C C G T A C T G A C A G T G A T C C T G A A T G C A C G T G C T A C G T A

PB0144.1_Lef1_2/Jaspar

Match Rank:4
Score:0.67
Offset:0
Orientation:forward strand
Alignment:ARCGMTCAAT------
GAAGATCAATCACTTA
 C G T A C T G A A G T C C A T G G T A C A C G T A G T C C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
T A C G C G T A T C G A T A C G G C T A C G A T A G T C C G T A C T G A C A G T G A T C C T G A G T A C A G C T G C A T C G T A

PH0134.1_Pbx1/Jaspar

Match Rank:5
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--ARCGMTCAAT-----
TCACCCATCAATAAACA
 A C G T A C G T C G T A C T G A A G T C C A T G G T A C A C G T A G T C C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T
G A C T A G T C C G T A G A T C G T A C T G A C C T G A C G A T G T A C G T C A G C T A C G A T G T A C G C T A C G A T T G A C T G C A

PH0170.1_Tgif2/Jaspar

Match Rank:6
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----ARCGMTCAAT--
AACTAGCTGTCAATAC
 A C G T A C G T A C G T A C G T C G T A C T G A A G T C C A T G G T A C A C G T A G T C C G T A C G T A A C G T A C G T A C G T
G C T A C G T A A T G C A G C T C T G A A T C G G T A C A G C T C T A G C G A T A G T C C G T A G C T A C G A T T G C A T A G C

PH0102.1_Meis1/Jaspar

Match Rank:7
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----ARCGMTCAAT--
AACGAGCTGTCAATAC
 A C G T A C G T A C G T A C G T C G T A C T G A A G T C C A T G G T A C A C G T A G T C C G T A C G T A A C G T A C G T A C G T
C G T A C G T A T A C G A T C G C T G A A T C G T G A C A G C T C T A G C G A T A G T C C G T A G C T A C G A T T G C A G A T C

PH0104.1_Meis2/Jaspar

Match Rank:8
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----ARCGMTCAAT--
AAAGACCTGTCAATAC
 A C G T A C G T A C G T A C G T C G T A C T G A A G T C C A T G G T A C A C G T A G T C C G T A C G T A A C G T A C G T A C G T
G C T A C G T A T C A G A T C G C T G A A T G C G T A C A G C T C T A G C G A T A G T C C G T A G C T A C G A T G T C A A G T C

PBX1/MA0070.1/Jaspar

Match Rank:9
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--ARCGMTCAAT
CCATCAATCAAA
 A C G T A C G T C G T A C T G A A G T C C A T G G T A C A C G T A G T C C G T A C G T A A C G T
G A T C A G T C T C G A G A C T A G T C G T C A C G T A A C G T A G T C G C T A C G T A C G T A

PH0140.1_Pknox1/Jaspar

Match Rank:10
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----ARCGMTCAAT--
AAAGACCTGTCAATCC
 A C G T A C G T A C G T A C G T C G T A C T G A A G T C C A T G G T A C A C G T A G T C C G T A C G T A A C G T A C G T A C G T
C G T A C T G A T G C A A T C G C T G A A T G C T G A C A G C T C T A G G C A T A G T C C G T A G C T A G C A T T G A C T G A C