Information for 8-GCACAGTGCAACA (Motif 18)

A T C G A T G C C G T A T G A C C G T A A C T G A C G T A C T G T G A C C G T A C T G A A T G C T C G A
Reverse Opposite:
A G C T T A C G G A C T G A C T A C T G T G A C T G C A G T A C C G A T A C T G C G A T A T C G A T G C
p-value:1e-11
log p-value:-2.558e+01
Information Content per bp:1.616
Number of Target Sequences with motif47.0
Percentage of Target Sequences with motif6.23%
Number of Background Sequences with motif939.2
Percentage of Background Sequences with motif1.95%
Average Position of motif in Targets50.4 +/- 25.5bp
Average Position of motif in Background50.3 +/- 29.5bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:1
Score:0.68
Offset:-6
Orientation:forward strand
Alignment:------GCACAGTGCAACA
CANAGNNCAAAGTCCA---
 A C G T A C G T A C G T A C G T A C G T A C G T A T C G A T G C C G T A T G A C C G T A A C T G A C G T A C T G T G A C C G T A C T G A A T G C T C G A
G T A C G C T A T C A G C T G A C T A G C A T G A G C T G A T C T G C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A A C G T A C G T A C G T

HNF4G/MA0484.1/Jaspar

Match Rank:2
Score:0.67
Offset:-5
Orientation:forward strand
Alignment:-----GCACAGTGCAACA
AGAGTCCAAAGTCCA---
 A C G T A C G T A C G T A C G T A C G T A T C G A T G C C G T A T G A C C G T A A C T G A C G T A C T G T G A C C G T A C T G A A T G C T C G A
C G T A T C A G C T G A C T A G C A G T A G T C A G T C T G C A T C G A C T G A C A T G C A G T A G T C G A T C G C T A A C G T A C G T A C G T

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:3
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----GCACAGTGCAACA
TAGGGCAAAGGTCA---
 A C G T A C G T A C G T A C G T A T C G A T G C C G T A T G A C C G T A A C T G A C G T A C T G T G A C C G T A C T G A A T G C T C G A
A G C T C T G A C T A G C T A G A C T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C T C G A A C G T A C G T A C G T

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:4
Score:0.63
Offset:1
Orientation:forward strand
Alignment:GCACAGTGCAACA
-CAAAGGTCAG--
 A T C G A T G C C G T A T G A C C G T A A C T G A C G T A C T G T G A C C G T A C T G A A T G C T C G A
A C G T A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G A C G T A C G T

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:5
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----GCACAGTGCAACA
GTAGGGCAAAGGTCA---
 A C G T A C G T A C G T A C G T A C G T A T C G A T G C C G T A T G A C C G T A A C T G A C G T A C T G T G A C C G T A C T G A A T G C T C G A
A T C G A G C T C T G A C T A G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A A C G T A C G T A C G T

PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer

Match Rank:6
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----GCACAGTGCAACA
TGGGGCAAAGGTCA---
 A C G T A C G T A C G T A C G T A T C G A T G C C G T A T G A C C G T A A C T G A C G T A C T G T G A C C G T A C T G A A T G C T C G A
C A G T C T A G C A T G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A A C G T A C G T A C G T

Hnf4a/MA0114.3/Jaspar

Match Rank:7
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----GCACAGTGCAACA
GGGGTCAAAGTCCAAT-
 A C G T A C G T A C G T A C G T A T C G A T G C C G T A T G A C C G T A A C T G A C G T A C T G T G A C C G T A C T G A A T G C T C G A
T C A G T C A G C T A G C A T G C A G T A G T C T C G A C T G A C T G A A C T G A C G T A G T C A G T C C T G A T C G A G A C T A C G T

PB0134.1_Hnf4a_2/Jaspar

Match Rank:8
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--GCACAGTGCAACA-
GGCAAAAGTCCAATAA
 A C G T A C G T A T C G A T G C C G T A T G A C C G T A A C T G A C G T A C T G T G A C C G T A C T G A A T G C T C G A A C G T
A C G T A C G T G A T C G T A C C G T A C T G A C T G A A C T G A C G T G T A C A G T C C T G A G T C A C G A T G T C A G C A T

POL009.1_DCE_S_II/Jaspar

Match Rank:9
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:GCACAGTGCAACA
-CACAGN------
 A T C G A T G C C G T A T G A C C G T A A C T G A C G T A C T G T G A C C G T A C T G A A T G C T C G A
A C G T T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T A C G T A C G T A C G T

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:10
Score:0.55
Offset:-4
Orientation:forward strand
Alignment:----GCACAGTGCAACA
CCAGGAACAG-------
 A C G T A C G T A C G T A C G T A T C G A T G C C G T A T G A C C G T A A C T G A C G T A C T G T G A C C G T A C T G A A T G C T C G A
T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T