Information for 1-RSYGCCCCCTRGTGGC (Motif 1)

C T G A A T C G A G C T C A T G A G T C A G T C G A T C A G T C A G T C C A G T C T G A A T C G A G C T A C T G A C T G A G T C
Reverse Opposite:
C T A G G T A C A G T C C T G A A T G C G A C T G T C A A C T G C T A G C A T G A C T G A C T G G T A C C T G A A T G C A G C T
p-value:1e-30
log p-value:-6.979e+01
Information Content per bp:1.734
Number of Target Sequences with motif31.0
Percentage of Target Sequences with motif4.11%
Number of Background Sequences with motif89.5
Percentage of Background Sequences with motif0.19%
Average Position of motif in Targets49.6 +/- 22.8bp
Average Position of motif in Background50.3 +/- 26.3bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.95
Offset:-4
Orientation:forward strand
Alignment:----RSYGCCCCCTRGTGGC
CNNBRGCGCCCCCTGSTGGC
 A C G T A C G T A C G T A C G T C T G A A T C G A G C T C A T G A G T C A G T C G A T C A G T C A G T C C A G T C T G A A T C G A G C T A C T G A C T G A G T C
T A G C A G T C T G A C A G T C C T A G A T C G A G T C C A T G T G A C A G T C G T A C A G T C A G T C G C A T C T A G A T C G G C A T A C T G A T C G G A T C

CTCF/MA0139.1/Jaspar

Match Rank:2
Score:0.95
Offset:-1
Orientation:reverse strand
Alignment:-RSYGCCCCCTRGTGGC--
TAGCGCCCCCTGGTGGCCA
 A C G T C T G A A T C G A G C T C A T G A G T C A G T C G A T C A G T C A G T C C A G T C T G A A T C G A G C T A C T G A C T G A G T C A C G T A C G T
A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:3
Score:0.93
Offset:-2
Orientation:forward strand
Alignment:--RSYGCCCCCTRGTGGC--
ANAGTGCCACCTGGTGGCCA
 A C G T A C G T C T G A A T C G A G C T C A T G A G T C A G T C G A T C A G T C A G T C C A G T C T G A A T C G A G C T A C T G A C T G A G T C A C G T A C G T
T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

PB0076.1_Sp4_1/Jaspar

Match Rank:4
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---RSYGCCCCCTRGTGGC
GGTCCCGCCCCCTTCTC--
 A C G T A C G T A C G T C T G A A T C G A G C T C A T G A G T C A G T C G A T C A G T C A G T C C A G T C T G A A T C G A G C T A C T G A C T G A G T C
A C T G C A T G G A C T G T A C G T A C A G T C C T A G A G T C A T G C A G T C G T A C A G T C G A C T G A C T T A G C A G C T A G T C A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:5
Score:0.61
Offset:4
Orientation:reverse strand
Alignment:RSYGCCCCCTRGTGGC
----CCCCCTGCTGTG
 C T G A A T C G A G C T C A T G A G T C A G T C G A T C A G T C A G T C C A G T C T G A A T C G A G C T A C T G A C T G A G T C
A C G T A C G T A C G T A C G T G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:6
Score:0.61
Offset:2
Orientation:forward strand
Alignment:RSYGCCCCCTRGTGGC-
--GGCCYCCTGCTGDGH
 C T G A A T C G A G C T C A T G A G T C A G T C G A T C A G T C A G T C C A G T C T G A A T C G A G C T A C T G A C T G A G T C A C G T
A C G T A C G T C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

PB0103.1_Zic3_1/Jaspar

Match Rank:7
Score:0.59
Offset:2
Orientation:forward strand
Alignment:RSYGCCCCCTRGTGGC-
--CCCCCCCGGGGGGGT
 C T G A A T C G A G C T C A T G A G T C A G T C G A T C A G T C A G T C C A G T C T G A A T C G A G C T A C T G A C T G A G T C A C G T
A C G T A C G T A T G C G T A C G T A C G T A C G T A C A T G C T A G C A C T G T A C G A C T G C A T G C A T G C A T G A T C G A G C T

ZIC4/MA0751.1/Jaspar

Match Rank:8
Score:0.59
Offset:2
Orientation:forward strand
Alignment:RSYGCCCCCTRGTGGC-
--GACCCCCCGCTGTGC
 C T G A A T C G A G C T C A T G A G T C A G T C G A T C A G T C A G T C C A G T C T G A A T C G A G C T A C T G A C T G A G T C A C G T
A C G T A C G T A C T G T C G A G T A C G T A C G T A C G T A C G T A C G A T C C T A G A G T C C A G T C T A G G A C T A C T G G T A C

PB0101.1_Zic1_1/Jaspar

Match Rank:9
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:RSYGCCCCCTRGTGGC-
---CCCCCCCGGGGGNN
 C T G A A T C G A G C T C A T G A G T C A G T C G A T C A G T C A G T C C A G T C T G A A T C G A G C T A C T G A C T G A G T C A C G T
A C G T A C G T A C G T T A G C T G A C G A T C G T A C G T A C A T G C T A G C A T C G T A C G A C T G A C T G C A T G C A G T T A C G

PB0102.1_Zic2_1/Jaspar

Match Rank:10
Score:0.58
Offset:2
Orientation:forward strand
Alignment:RSYGCCCCCTRGTGGC-
--CCCCCCCGGGGGGGT
 C T G A A T C G A G C T C A T G A G T C A G T C G A T C A G T C A G T C C A G T C T G A A T C G A G C T A C T G A C T G A G T C A C G T
A C G T A C G T A T G C G T A C G T A C G T A C G T A C A T G C T A G C A C T G A T C G A C T G C A T G C A T G C A T G A T C G A C G T