Information for 1-CCAGTCAGGG (Motif 7)

A G T C T G A C C G T A A T C G C G A T A G T C C G T A C T A G A T C G C T A G
Reverse Opposite:
A G T C T A G C G A T C G C A T A C T G G C T A A T G C C G A T A C T G A C T G
p-value:1e-9
log p-value:-2.200e+01
Information Content per bp:1.828
Number of Target Sequences with motif23.0
Percentage of Target Sequences with motif2.58%
Number of Background Sequences with motif240.5
Percentage of Background Sequences with motif0.49%
Average Position of motif in Targets55.3 +/- 23.8bp
Average Position of motif in Background49.1 +/- 26.6bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:CCAGTCAGGG
CCAGACAG--
 A G T C T G A C C G T A A T C G C G A T A G T C C G T A C T A G A T C G C T A G
A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:2
Score:0.66
Offset:-5
Orientation:forward strand
Alignment:-----CCAGTCAGGG--
CAAATCCAGACATCACA
 A C G T A C G T A C G T A C G T A C G T A G T C T G A C C G T A A T C G C G A T A G T C C G T A C T A G A T C G C T A G A C G T A C G T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

NFYB/MA0502.1/Jaspar

Match Rank:3
Score:0.64
Offset:-7
Orientation:forward strand
Alignment:-------CCAGTCAGGG
AAATGGACCAATCAG--
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C T G A C C G T A A T C G C G A T A G T C C G T A C T A G A T C G C T A G
T C G A G T C A G T C A A G C T A T C G T C A G C T G A A G T C A G T C C G T A C T G A A C G T T A G C T C G A T A C G A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:CCAGTCAGGG
CCAGACRSVB
 A G T C T G A C C G T A A T C G C G A T A G T C C G T A C T A G A T C G C T A G
T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

NFYA/MA0060.2/Jaspar

Match Rank:5
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----CCAGTCAGGG----
TGGACCAATCAGCACTCT
 A C G T A C G T A C G T A C G T A G T C T G A C C G T A A T C G C G A T A G T C C G T A C T A G A T C G C T A G A C G T A C G T A C G T A C G T
A G C T A T C G T C A G C T G A A T G C A G T C C G T A T C G A G A C T T A G C T C G A T C A G T G A C C T G A A T G C A C G T G T A C C G A T

Pax2/MA0067.1/Jaspar

Match Rank:6
Score:0.61
Offset:2
Orientation:forward strand
Alignment:CCAGTCAGGG
--AGTCACGC
 A G T C T G A C C G T A A T C G C G A T A G T C C G T A C T A G A T C G C T A G
A C G T A C G T G C T A C T A G G C A T A G T C C T G A G A T C C A T G A T C G

Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer

Match Rank:7
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----CCAGTCAGGG-
GGGGCTYGKCTGGGA
 A C G T A C G T A C G T A C G T A G T C T G A C C G T A A T C G C G A T A G T C C G T A C T A G A T C G C T A G A C G T
C T A G C A T G C A T G T A C G A G T C G C A T A G C T C T A G A C G T A G T C G A C T A C T G A C T G A C T G T C G A

POL004.1_CCAAT-box/Jaspar

Match Rank:8
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----CCAGTCAGGG
ACTAGCCAATCA---
 A C G T A C G T A C G T A C G T A C G T A G T C T G A C C G T A A T C G C G A T A G T C C G T A C T A G A T C G C T A G
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A A C G T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:9
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:CCAGTCAGGG
BCAGACWA--
 A G T C T G A C C G T A A T C G C G A T A G T C C G T A C T A G A T C G C T A G
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:10
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--CCAGTCAGGG
AGCCACTCAAG-
 A C G T A C G T A G T C T G A C C G T A A T C G C G A T A G T C C G T A C T A G A T C G C T A G
C T G A C T A G T A G C A G T C G C T A A G T C A C G T A G T C G T C A C T G A T A C G A C G T