Information for 13-VTTTRTAGST (Motif 35)

T C A G A G C T G A C T G C A T T C A G G C A T C T G A C A T G A T C G A G C T
Reverse Opposite:
T C G A T A G C G T A C G A C T C G T A A G T C C G T A C T G A T C G A A G T C
p-value:1e-4
log p-value:-1.132e+01
Information Content per bp:1.561
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif2.32%
Number of Background Sequences with motif295.8
Percentage of Background Sequences with motif0.63%
Average Position of motif in Targets53.1 +/- 24.3bp
Average Position of motif in Background48.8 +/- 28.7bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.19
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:1
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:VTTTRTAGST
TTTAATTGCN
 T C A G A G C T G A C T G C A T T C A G G C A T C T G A C A T G A T C G A G C T
C G A T A G C T C G A T G C T A C G T A G A C T C A G T C T A G T A G C A T G C

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:2
Score:0.71
Offset:-2
Orientation:reverse strand
Alignment:--VTTTRTAGST
DGWTTTATGRCN
 A C G T A C G T T C A G A G C T G A C T G C A T T C A G G C A T C T G A C A T G A T C G A G C T
C A G T C A T G G C A T C G A T C G A T C G A T C T G A A G C T C A T G C T A G A G T C A T G C

HOXB13/MA0901.1/Jaspar

Match Rank:3
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-VTTTRTAGST
NTTTTATTGG-
 A C G T T C A G A G C T G A C T G C A T T C A G G C A T C T G A C A T G A T C G A G C T
C A T G C A G T C A G T C G A T G C A T C T G A G C A T C A G T C T A G A T C G A C G T

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:4
Score:0.69
Offset:0
Orientation:forward strand
Alignment:VTTTRTAGST
TTTTATKRGG
 T C A G A G C T G A C T G C A T T C A G G C A T C T G A C A T G A T C G A G C T
C G A T A C G T A C G T A C G T C G T A A G C T C A G T C T A G A T C G A C T G

CDX2/MA0465.1/Jaspar

Match Rank:5
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:VTTTRTAGST-
TTTTATGGCTN
 T C A G A G C T G A C T G C A T T C A G G C A T C T G A C A T G A T C G A G C T A C G T
A G C T A C G T A C G T A C G T C G T A A C G T C A T G C T A G A G T C G A C T A G C T

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:6
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--VTTTRTAGST
TGATTTATGGCC
 A C G T A C G T T C A G A G C T G A C T G C A T T C A G G C A T C T G A C A T G A T C G A G C T
C G A T C T A G C G T A C G A T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C

Hoxc9/MA0485.1/Jaspar

Match Rank:7
Score:0.68
Offset:-3
Orientation:reverse strand
Alignment:---VTTTRTAGST
NTGATTTATGGCC
 A C G T A C G T A C G T T C A G A G C T G A C T G C A T T C A G G C A T C T G A C A T G A T C G A G C T
T C A G C G A T C T A G C G T A A C G T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C

HOXA13/MA0650.1/Jaspar

Match Rank:8
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-VTTTRTAGST
TTTTTATTGG-
 A C G T T C A G A G C T G A C T G C A T T C A G G C A T C T G A C A T G A T C G A G C T
C A G T A C G T A C G T C G A T C G A T C G T A C G A T C A G T T C A G A T C G A C G T

CDX1/MA0878.1/Jaspar

Match Rank:9
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:VTTTRTAGST
TTTTATTGC-
 T C A G A G C T G A C T G C A T T C A G G C A T C T G A C A T G A T C G A G C T
C A G T C G A T G C A T C G A T C G T A A G C T C A G T C T A G A G T C A C G T

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:10
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:VTTTRTAGST
TTTTATTRGN
 T C A G A G C T G A C T G C A T T C A G G C A T C T G A C A T G A T C G A G C T
C G A T A C G T A C G T C G A T C G T A G C A T C A G T C T G A A T C G G C T A