Information for 11-TTTTGTCRACAAAGGC (Motif 15)

G A C T A C G T A G C T C G A T A T C G A C G T G A T C C T G A C G T A T G A C C G T A G T C A C G T A A C T G C T A G A G T C
Reverse Opposite:
T C A G A G T C G T A C A C G T A C G T C G A T A C T G A C G T A G C T C A T G C G T A A T G C C G T A C T G A G T C A C G T A
p-value:1e-9
log p-value:-2.209e+01
Information Content per bp:1.730
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif1.02%
Number of Background Sequences with motif10.5
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets70.1 +/- 25.6bp
Average Position of motif in Background51.6 +/- 22.9bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox2/MA0143.3/Jaspar

Match Rank:1
Score:0.66
Offset:7
Orientation:reverse strand
Alignment:TTTTGTCRACAAAGGC
-------AACAAAGG-
 G A C T A C G T A G C T C G A T A T C G A C G T G A T C C T G A C G T A T G A C C G T A G T C A C G T A A C T G C T A G A G T C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:2
Score:0.64
Offset:7
Orientation:reverse strand
Alignment:TTTTGTCRACAAAGGC
-------RACAAWGG-
 G A C T A C G T A G C T C G A T A T C G A C G T G A T C C T G A C G T A T G A C C G T A G T C A C G T A A C T G C T A G A G T C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G A C G T

PB0019.1_Foxl1_1/Jaspar

Match Rank:3
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-TTTTGTCRACAAAGGC
TAAATGTAAACAAAGGT
 A C G T G A C T A C G T A G C T C G A T A T C G A C G T G A T C C T G A C G T A T G A C C G T A G T C A C G T A A C T G C T A G A G T C
C G A T C G T A C G T A C G T A G C A T C T A G C G A T G T C A C G T A C T G A A G T C C G T A G C T A C G T A T A C G T C A G A C G T

PB0015.1_Foxa2_1/Jaspar

Match Rank:4
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-TTTTGTCRACAAAGGC
AAAAAGTAAACAAAGAC
 A C G T G A C T A C G T A G C T C G A T A T C G A C G T G A T C C T G A C G T A T G A C C G T A G T C A C G T A A C T G C T A G A G T C
G C T A C G T A G C T A C G T A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A G C T A C G T A T A C G C T G A A G T C

PB0016.1_Foxj1_1/Jaspar

Match Rank:5
Score:0.63
Offset:1
Orientation:forward strand
Alignment:TTTTGTCRACAAAGGC-
-AAAGTAAACAAAAATT
 G A C T A C G T A G C T C G A T A T C G A C G T G A T C C T G A C G T A T G A C C G T A G T C A C G T A A C T G C T A G A G T C A C G T
A C G T G C T A C G A T G C T A C T A G G A C T G T C A G C T A C G T A G A T C C G T A G T C A C G T A G T C A C G T A C A G T C A G T

Foxk1/MA0852.1/Jaspar

Match Rank:6
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-TTTTGTCRACAAAGGC
AAAATGTAAACAAACAG
 A C G T G A C T A C G T A G C T C G A T A T C G A C G T G A T C C T G A C G T A T G A C C G T A G T C A C G T A A C T G C T A G A G T C
C G T A C T G A C G T A C G T A A C G T T C A G C G A T G T C A G C T A C G T A A G T C C G T A G C T A C G T A T A G C T C G A A T C G

PB0018.1_Foxk1_1/Jaspar

Match Rank:7
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-TTTTGTCRACAAAGGC
AAAATGTAAACAAACAG
 A C G T G A C T A C G T A G C T C G A T A T C G A C G T G A T C C T G A C G T A T G A C C G T A G T C A C G T A A C T G C T A G A G T C
C G T A C T G A C G T A C G T A A C G T T C A G C G A T G T C A G C T A C G T A A G T C C G T A G C T A C G T A T A G C T C G A A T C G

Sox3/MA0514.1/Jaspar

Match Rank:8
Score:0.61
Offset:5
Orientation:reverse strand
Alignment:TTTTGTCRACAAAGGC
-----AAAACAAAGG-
 G A C T A C G T A G C T C G A T A T C G A C G T G A T C C T G A C G T A T G A C C G T A G T C A C G T A A C T G C T A G A G T C
A C G T A C G T A C G T A C G T A C G T T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G A C G T

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:9
Score:0.60
Offset:5
Orientation:reverse strand
Alignment:TTTTGTCRACAAAGGC
-----GGAACAAAGR-
 G A C T A C G T A G C T C G A T A T C G A C G T G A T C C T G A C G T A T G A C C G T A G T C A C G T A A C T G C T A G A G T C
A C G T A C G T A C G T A C G T A C G T T C A G T C A G T C G A C G T A A G T C C G T A C G T A C G T A A C T G T C A G A C G T

PB0071.1_Sox4_1/Jaspar

Match Rank:10
Score:0.60
Offset:2
Orientation:forward strand
Alignment:TTTTGTCRACAAAGGC---
--AGAAGAACAAAGGACTA
 G A C T A C G T A G C T C G A T A T C G A C G T G A T C C T G A C G T A T G A C C G T A G T C A C G T A A C T G C T A G A G T C A C G T A C G T A C G T
A C G T A C G T G T C A A C T G C T G A C G T A C T A G T C G A C G T A A G T C C G T A C G T A C G T A C T A G T C A G T C G A A G T C G C A T G C T A