Information for 1-GACCAATCAG (Motif 1)

C T A G T G C A A T G C A G T C C G T A T G C A A G C T A T G C T G C A T C A G
Reverse Opposite:
A G T C A C G T A T C G C T G A A C G T C G A T C T A G A T C G A C G T G A T C
p-value:1e-22
log p-value:-5.103e+01
Information Content per bp:1.656
Number of Target Sequences with motif70.0
Percentage of Target Sequences with motif8.30%
Number of Background Sequences with motif944.9
Percentage of Background Sequences with motif2.00%
Average Position of motif in Targets48.9 +/- 27.1bp
Average Position of motif in Background48.5 +/- 30.1bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.09
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFYB/MA0502.1/Jaspar

Match Rank:1
Score:0.92
Offset:-5
Orientation:forward strand
Alignment:-----GACCAATCAG
AAATGGACCAATCAG
 A C G T A C G T A C G T A C G T A C G T C T A G T G C A A T G C A G T C C G T A T G C A A G C T A T G C T G C A T C A G
T C G A G T C A G T C A A G C T A T C G T C A G C T G A A G T C A G T C C G T A C T G A A C G T T A G C T C G A T A C G

NFY(CCAAT)/Promoter/Homer

Match Rank:2
Score:0.89
Offset:0
Orientation:forward strand
Alignment:GACCAATCAG
AGCCAATCGG
 C T A G T G C A A T G C A G T C C G T A T G C A A G C T A T G C T G C A T C A G
T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G

NFYA/MA0060.2/Jaspar

Match Rank:3
Score:0.88
Offset:-2
Orientation:reverse strand
Alignment:--GACCAATCAG------
TGGACCAATCAGCACTCT
 A C G T A C G T C T A G T G C A A T G C A G T C C G T A T G C A A G C T A T G C T G C A T C A G A C G T A C G T A C G T A C G T A C G T A C G T
A G C T A T C G T C A G C T G A A T G C A G T C C G T A T C G A G A C T T A G C T C G A T C A G T G A C C T G A A T G C A C G T G T A C C G A T

POL004.1_CCAAT-box/Jaspar

Match Rank:4
Score:0.83
Offset:-3
Orientation:forward strand
Alignment:---GACCAATCAG
ACTAGCCAATCA-
 A C G T A C G T A C G T C T A G T G C A A T G C A G T C C G T A T G C A A G C T A T G C T G C A T C A G
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A A C G T

Dux/MA0611.1/Jaspar

Match Rank:5
Score:0.81
Offset:2
Orientation:forward strand
Alignment:GACCAATCAG
--CCAATCAA
 C T A G T G C A A T G C A G T C C G T A T G C A A G C T A T G C T G C A T C A G
A C G T A C G T A T G C A G T C C G T A C G T A A C G T A G T C C G T A C G T A

PH0026.1_Duxbl/Jaspar

Match Rank:6
Score:0.72
Offset:-2
Orientation:forward strand
Alignment:--GACCAATCAG-----
CGACCCAATCAACGGTG
 A C G T A C G T C T A G T G C A A T G C A G T C C G T A T G C A A G C T A T G C T G C A T C A G A C G T A C G T A C G T A C G T A C G T
A G T C C T A G C T G A A G T C A G T C A G T C G T C A G T C A A G C T A G T C C G T A C T G A A G T C T A C G T C A G G C A T T A C G

Gfi1/MA0038.1/Jaspar

Match Rank:7
Score:0.72
Offset:2
Orientation:forward strand
Alignment:GACCAATCAG--
--CAAATCACTG
 C T A G T G C A A T G C A G T C C G T A T G C A A G C T A T G C T G C A T C A G A C G T A C G T
A C G T A C G T A G T C T G C A C G T A C G T A C A G T G T A C G C T A T A G C G C A T T A C G

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:8
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:GACCAATCAG
MRSCACTYAA
 C T A G T G C A A T G C A G T C C G T A T G C A A G C T A T G C T G C A T C A G
G T C A C T G A T A G C A G T C C G T A G T A C G C A T A G T C C T G A T C G A

EN2/MA0642.1/Jaspar

Match Rank:9
Score:0.68
Offset:1
Orientation:forward strand
Alignment:GACCAATCAG-
-CCCAATTAGC
 C T A G T G C A A T G C A G T C C G T A T G C A A G C T A T G C T G C A T C A G A C G T
A C G T T A G C A T G C A G T C T G C A T G C A A C G T A G C T C T G A T A C G A T G C

PH0107.1_Msx2/Jaspar

Match Rank:10
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---GACCAATCAG----
GAAGACCAATTAGCGCT
 A C G T A C G T A C G T C T A G T G C A A T G C A G T C C G T A T G C A A G C T A T G C T G C A T C A G A C G T A C G T A C G T A C G T
T C A G T G C A C T G A T A C G C T G A A T G C G A T C C G T A G T C A C G A T G A C T C T G A C A T G G A T C C A T G G A T C A G C T