Information for 13-TCACCGAGTG (Motif 39)

A C G T A G T C C G T A A G T C G T A C A C T G C G T A A T C G C G A T A C T G
Reverse Opposite:
A G T C C G T A A T G C A C G T G T A C A C T G A C T G A C G T A C T G C G T A
p-value:1e-3
log p-value:-8.952e+00
Information Content per bp:1.884
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.94%
Number of Background Sequences with motif56.4
Percentage of Background Sequences with motif0.12%
Average Position of motif in Targets55.0 +/- 26.5bp
Average Position of motif in Background44.9 +/- 36.3bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.67
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0139.1_Irf5_2/Jaspar

Match Rank:1
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-TCACCGAGTG----
TTGACCGAGAATTCC
 A C G T A C G T A G T C C G T A A G T C G T A C A C T G C G T A A T C G C G A T A C T G A C G T A C G T A C G T A C G T
A G C T G C A T C T A G C G T A G A C T G T A C C T A G C T G A A T C G C G T A C T G A G A C T G A C T A G T C T A G C

PB0140.1_Irf6_2/Jaspar

Match Rank:2
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-TCACCGAGTG----
NNNACCGAGAGTNNN
 A C G T A C G T A G T C C G T A A G T C G T A C A C T G C G T A A T C G C G A T A C T G A C G T A C G T A C G T A C G T
A T C G G A C T C A T G G T C A A G T C G A T C C T A G T C G A T A C G G T C A C A T G C G A T T C A G T A C G A C G T

RORA(var.2)/MA0072.1/Jaspar

Match Rank:3
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-TCACCGAGTG---
TTGACCTANTTATN
 A C G T A C G T A G T C C G T A A G T C G T A C A C T G C G T A A T C G C G A T A C T G A C G T A C G T A C G T
A G C T A C G T A C T G C G T A A G T C A G T C A G C T C G T A T A G C C G A T A C G T G C T A G C A T C G T A

Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer

Match Rank:4
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:TCACCGAGTG------
TGACCCAGTGACCTAC
 A C G T A G T C C G T A A G T C G T A C A C T G C G T A A T C G C G A T A C T G A C G T A C G T A C G T A C G T A C G T A C G T
G C A T T A C G G C T A A T G C G T A C A G T C T G C A T A C G C G A T C A T G T G C A T G A C G A T C G A C T T C G A T A G C

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:5
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:TCACCGAGTG
TGACCTARTT
 A C G T A G T C C G T A A G T C G T A C A C T G C G T A A T C G C G A T A C T G
A G C T C T A G T C G A A G T C A T G C A G C T T G C A T C A G G C A T C G A T

RARA::RXRA/MA0159.1/Jaspar

Match Rank:6
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---TCACCGAGTG----
AGGTCACGGAGAGGTCA
 A C G T A C G T A C G T A C G T A G T C C G T A A G T C G T A C A C T G C G T A A T C G C G A T A C T G A C G T A C G T A C G T A C G T
C T G A A C T G C A T G A C G T A T G C C T G A A G C T T A C G T C A G C T G A T A C G T C G A A C T G A C T G C A G T A T G C C G T A

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:7
Score:0.55
Offset:-4
Orientation:reverse strand
Alignment:----TCACCGAGTG
NNACTTACCTN---
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A G T C G T A C A C T G C G T A A T C G C G A T A C T G
C T G A G A C T G C T A G A T C G C A T G A C T C G T A A G T C G A T C G C A T A C T G A C G T A C G T A C G T

MZF1/MA0056.1/Jaspar

Match Rank:8
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:TCACCGAGTG
TCCCCA----
 A C G T A G T C C G T A A G T C G T A C A C T G C G T A A T C G C G A T A C T G
A G C T A G T C G T A C A G T C G T A C T C G A A C G T A C G T A C G T A C G T

Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:9
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--TCACCGAGTG
TGACACCT----
 A C G T A C G T A C G T A G T C C G T A A G T C G T A C A C T G C G T A A T C G C G A T A C T G
G A C T T C A G C T G A A G T C C T G A T A G C G A T C G A C T A C G T A C G T A C G T A C G T

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:10
Score:0.54
Offset:3
Orientation:forward strand
Alignment:TCACCGAGTG---
---TTRAGTGSYK
 A C G T A G T C C G T A A G T C G T A C A C T G C G T A A T C G C G A T A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A G C T G A C T C T A G C G T A C A T G C G A T C T A G A T C G G A C T C A G T