Information for 22-RMAAKKWGGTMRGTKA (Motif 33)

C T A G G T A C C G T A C G T A A C G T A C T G C G A T A C T G A C T G A C G T G T A C C T G A A C T G A C G T A C G T C G T A
Reverse Opposite:
A C G T G T C A C G T A A G T C A G C T A C T G C G T A A G T C A G T C C G T A G T A C G T C A A C G T A C G T A C T G A G T C
p-value:1e-6
log p-value:-1.474e+01
Information Content per bp:1.819
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.47%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets54.6 +/- 30.1bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.67
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:1
Score:0.62
Offset:2
Orientation:forward strand
Alignment:RMAAKKWGGTMRGTKA
--AAYTAGGTCA----
 C T A G G T A C C G T A C G T A A C G T A C T G C G A T A C T G A C T G A C G T G T A C C T G A A C T G A C G T A C G T C G T A
A C G T A C G T G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A A C G T A C G T A C G T A C G T

RORA(var.2)/MA0072.1/Jaspar

Match Rank:2
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-RMAAKKWGGTMRGTKA
TATAAGTAGGTCAA---
 A C G T C T A G G T A C C G T A C G T A A C G T A C T G C G A T A C T G A C T G A C G T G T A C C T G A A C T G A C G T A C G T C G T A
C G A T C G T A C G A T G T C A C G T A A T C G A C G T C T G A A C T G A C T G A C G T A G T C C G T A T C G A A C G T A C G T A C G T

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:3
Score:0.61
Offset:5
Orientation:forward strand
Alignment:RMAAKKWGGTMRGTKA
-----CAGGTAAGTAT
 C T A G G T A C C G T A C G T A A C G T A C T G C G A T A C T G A C T G A C G T G T A C C T G A A C T G A C G T A C G T C G T A
A C G T A C G T A C G T A C G T A C G T T G A C C G T A C T A G A C T G A C G T C T G A C G T A C T A G C G A T C T G A G A C T

RORA/MA0071.1/Jaspar

Match Rank:4
Score:0.53
Offset:2
Orientation:forward strand
Alignment:RMAAKKWGGTMRGTKA
--ATCAAGGTCA----
 C T A G G T A C C G T A C G T A A C G T A C T G C G A T A C T G A C T G A C G T G T A C C T G A A C T G A C G T A C G T C G T A
A C G T A C G T C G T A G C A T T G A C C G T A C T G A A C T G A C T G A C G T A G T C C G T A A C G T A C G T A C G T A C G T

FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer

Match Rank:5
Score:0.52
Offset:5
Orientation:reverse strand
Alignment:RMAAKKWGGTMRGTKA---
-----NAGGTCANTGACCT
 C T A G G T A C C G T A C G T A A C G T A C T G C G A T A C T G A C T G A C G T G T A C C T G A A C T G A C G T A C G T C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T C A G T C G A C T A G C A T G A C G T A T G C T C G A G A C T A G C T T A C G T G C A G T A C G T A C A G C T

MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer

Match Rank:6
Score:0.52
Offset:8
Orientation:forward strand
Alignment:RMAAKKWGGTMRGTKA
--------GGCVGTTR
 C T A G G T A C C G T A C G T A A C G T A C T G C G A T A C T G A C T G A C G T G T A C C T G A A C T G A C G T A C G T C G T A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T A G C T A G A G T C T C A G A C T G A C G T A C G T C T G A

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:7
Score:0.51
Offset:6
Orientation:forward strand
Alignment:RMAAKKWGGTMRGTKA
------AGGTCA----
 C T A G G T A C C G T A C G T A A C G T A C T G C G A T A C T G A C T G A C G T G T A C C T G A A C T G A C G T A C G T C G T A
A C G T A C G T A C G T A C G T A C G T A C G T C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T A C G T A C G T

GLI2/MA0734.1/Jaspar

Match Rank:8
Score:0.51
Offset:1
Orientation:reverse strand
Alignment:RMAAKKWGGTMRGTKA
-CAGTGTGGTCGC---
 C T A G G T A C C G T A C G T A A C G T A C T G C G A T A C T G A C T G A C G T G T A C C T G A A C T G A C G T A C G T C G T A
A C G T G A T C G C T A C A T G A C G T A T C G C A G T T A C G C T A G A C G T G T A C A C T G G A T C A C G T A C G T A C G T

MAF::NFE2/MA0501.1/Jaspar

Match Rank:9
Score:0.50
Offset:2
Orientation:reverse strand
Alignment:RMAAKKWGGTMRGTKA-
--AAANTGCTGAGTCAT
 C T A G G T A C C G T A C G T A A C G T A C T G C G A T A C T G A C T G A C G T G T A C C T G A A C T G A C G T A C G T C G T A A C G T
A C G T A C G T C T G A C G T A G C T A G A C T G A C T T A C G G T A C G C A T C A T G G C T A T A C G A C G T G T A C C G T A A G C T

Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.50
Offset:2
Orientation:forward strand
Alignment:RMAAKKWGGTMRGTKA-
--AWWNTGCTGAGTCAT
 C T A G G T A C C G T A C G T A A C G T A C T G C G A T A C T G A C T G A C G T G T A C C T G A A C T G A C G T A C G T C G T A A C G T
A C G T A C G T C G T A C G T A C G T A G C A T G C A T T A C G G T A C G A C T A C T G C G T A A T C G A C G T G T A C C G T A A G C T