Information for 3-TTTGATTTATGTG (Motif 9)

A G C T G A C T C A G T A T C G C T G A C A G T A C G T C A G T G T C A C A G T C A T G A C G T T A C G
Reverse Opposite:
A T G C G T C A G T A C G C T A C A G T G C T A T G C A G T C A G A C T T A G C G T C A C T G A C T G A
p-value:1e-9
log p-value:-2.173e+01
Information Content per bp:1.655
Number of Target Sequences with motif24.0
Percentage of Target Sequences with motif4.35%
Number of Background Sequences with motif436.6
Percentage of Background Sequences with motif0.89%
Average Position of motif in Targets50.2 +/- 24.1bp
Average Position of motif in Background48.4 +/- 25.6bp
Strand Bias (log2 ratio + to - strand density)-1.2
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hoxa9/MA0594.1/Jaspar

Match Rank:1
Score:0.68
Offset:2
Orientation:reverse strand
Alignment:TTTGATTTATGTG
--TGATTTATGGC
 A G C T G A C T C A G T A T C G C T G A C A G T A C G T C A G T G T C A C A G T C A T G A C G T T A C G
A C G T A C G T C G A T C T A G G C T A A C G T C G A T A C G T C G T A A G C T C A T G C T A G A T G C

PBX1/MA0070.1/Jaspar

Match Rank:2
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:TTTGATTTATGTG
TTTGATTGATGN-
 A G C T G A C T C A G T A T C G C T G A C A G T A C G T C A G T G T C A C A G T C A T G A C G T T A C G
C G A T G C A T C A G T A C T G G T C A C G A T A C G T A C T G C G T A A C G T A C T G C A T G A C G T

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:3
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:TTTGATTTATGTG-
--TGATTTATGGCC
 A G C T G A C T C A G T A T C G C T G A C A G T A C G T C A G T G T C A C A G T C A T G A C G T T A C G A C G T
A C G T A C G T C G A T C T A G C G T A C G A T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C

PB0208.1_Zscan4_2/Jaspar

Match Rank:4
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:TTTGATTTATGTG-----
--NNNNTTGTGTGCTTNN
 A G C T G A C T C A G T A T C G C T G A C A G T A C G T C A G T G T C A C A G T C A T G A C G T T A C G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A G C T C G T A C G A T C A G T C A G T C G A T C T A G A G C T A C T G C G A T A C T G A G T C A G C T C G A T A T G C C A T G

Hoxc9/MA0485.1/Jaspar

Match Rank:5
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:TTTGATTTATGTG-
-NTGATTTATGGCC
 A G C T G A C T C A G T A T C G C T G A C A G T A C G T C A G T G T C A C A G T C A T G A C G T T A C G A C G T
A C G T T C A G C G A T C T A G C G T A A C G T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:6
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:TTTGATTTATGTG-
--TGATTTATGGCC
 A G C T G A C T C A G T A T C G C T G A C A G T A C G T C A G T G T C A C A G T C A T G A C G T T A C G A C G T
A C G T A C G T C G A T C T A G G C T A C G A T C A G T A C G T G T C A A G C T C A T G T C A G A G T C A G T C

Tcf7/MA0769.1/Jaspar

Match Rank:7
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--TTTGATTTATGTG
CCTTTGATCTTT---
 A C G T A C G T A G C T G A C T C A G T A T C G C T G A C A G T A C G T C A G T G T C A C A G T C A T G A C G T T A C G
A G T C A G T C C G A T A G C T G C A T A T C G T G C A G C A T T A G C G C A T G A C T G A C T A C G T A C G T A C G T

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:8
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:TTTGATTTATGTG
--TGATTGATGA-
 A G C T G A C T C A G T A T C G C T G A C A G T A C G T C A G T G T C A C A G T C A T G A C G T T A C G
A C G T A C G T C G A T T C A G G T C A A G C T C G A T C T A G C G T A A C G T C A T G C T G A A C G T

PB0084.1_Tcf7l2_1/Jaspar

Match Rank:9
Score:0.60
Offset:-6
Orientation:forward strand
Alignment:------TTTGATTTATGTG
ATTTCCTTTGATCTATA--
 A C G T A C G T A C G T A C G T A C G T A C G T A G C T G A C T C A G T A T C G C T G A C A G T A C G T C A G T G T C A C A G T C A T G A C G T T A C G
C G T A C G A T C A G T A G C T A G T C A G T C G A C T G A C T C G A T A C T G C G T A C G A T T A G C G C A T C G T A C A G T T G C A A C G T A C G T

PB0082.1_Tcf3_1/Jaspar

Match Rank:10
Score:0.59
Offset:-6
Orientation:reverse strand
Alignment:------TTTGATTTATGTG
NNTTCCTTTGATCTANA--
 A C G T A C G T A C G T A C G T A C G T A C G T A G C T G A C T C A G T A T C G C T G A C A G T A C G T C A G T G T C A C A G T C A T G A C G T T A C G
C G A T C G A T C G A T A G C T A G T C A G T C G C A T G A C T C G A T A T C G C G T A C G A T T A G C G C A T C G T A C G A T C T G A A C G T A C G T