Information for 6-CCCTTTGTYCHGCACC (Motif 8)

A G T C G A T C A G T C A C G T A C G T A C G T C T A G A G C T A G C T A G T C G T A C A C T G A G T C G T C A A G T C A G T C
Reverse Opposite:
C T A G A C T G C A G T A C T G G T A C C A T G A C T G T C G A T C G A A G T C C G T A T G C A C G T A A C T G C T A G A C T G
p-value:1e-9
log p-value:-2.218e+01
Information Content per bp:1.745
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif1.27%
Number of Background Sequences with motif13.7
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets47.0 +/- 28.7bp
Average Position of motif in Background40.4 +/- 19.7bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.14
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:1
Score:0.68
Offset:1
Orientation:forward strand
Alignment:CCCTTTGTYCHGCACC
-YCTTTGTTCC-----
 A G T C G A T C A G T C A C G T A C G T A C G T C T A G A G C T A G C T A G T C G T A C A C T G A G T C G T C A A G T C A G T C
A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A G T C A G T C A C G T A C G T A C G T A C G T A C G T

Sox3/MA0514.1/Jaspar

Match Rank:2
Score:0.63
Offset:1
Orientation:forward strand
Alignment:CCCTTTGTYCHGCACC
-CCTTTGTTTT-----
 A G T C G A T C A G T C A C G T A C G T A C G T C T A G A G C T A G C T A G T C G T A C A C T G A G T C G T C A A G T C A G T C
A C G T A T G C A G T C C G A T A C G T A C G T A T C G A C G T A G C T A G C T A G C T A C G T A C G T A C G T A C G T A C G T

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:3
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--CCCTTTGTYCHGCACC
TGACCTTTGCCCTAN---
 A C G T A C G T A G T C G A T C A G T C A C G T A C G T A C G T C T A G A G C T A G C T A G T C G T A C A C T G A G T C G T C A A G T C A G T C
C G A T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G G T A C G A T C G A T C G A C T T C G A T A G C A C G T A C G T A C G T

PB0071.1_Sox4_1/Jaspar

Match Rank:4
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---CCCTTTGTYCHGCACC
TNNTCCTTTGTTCTNNT--
 A C G T A C G T A C G T A G T C G A T C A G T C A C G T A C G T A C G T C T A G A G C T A G C T A G T C G T A C A C T G A G T C G T C A A G T C A G T C
C G A T C G T A T C A G A G C T A G T C A G T C C G A T A C G T C G A T T A C G C G A T A G C T G A T C G C A T G A C T T G A C C A G T A C G T A C G T

PB0061.1_Sox11_1/Jaspar

Match Rank:5
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---CCCTTTGTYCHGCACC
NNNTCCTTTGTTCTNNN--
 A C G T A C G T A C G T A G T C G A T C A G T C A C G T A C G T A C G T C T A G A G C T A G C T A G T C G T A C A C T G A G T C G T C A A G T C A G T C
C G A T C G T A T C A G A G C T A G T C G A T C C G A T A C G T C G A T A C T G C G A T A G C T G A T C G C A T G C A T T G C A C G A T A C G T A C G T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:6
Score:0.60
Offset:1
Orientation:forward strand
Alignment:CCCTTTGTYCHGCACC
-CCWTTGTYYB-----
 A G T C G A T C A G T C A C G T A C G T A C G T C T A G A G C T A G C T A G T C G T A C A C T G A G T C G T C A A G T C A G T C
A C G T A T G C A G T C G C A T A G C T A C G T T C A G C G A T A G C T G A T C A T C G A C G T A C G T A C G T A C G T A C G T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.60
Offset:0
Orientation:forward strand
Alignment:CCCTTTGTYCHGCACC
NCCATTGTTC------
 A G T C G A T C A G T C A C G T A C G T A C G T C T A G A G C T A G C T A G T C G T A C A C T G A G T C G T C A A G T C A G T C
A T G C A G T C G A T C C G T A A C G T A C G T A C T G A C G T A G C T G A T C A C G T A C G T A C G T A C G T A C G T A C G T

Sox2/MA0143.3/Jaspar

Match Rank:8
Score:0.59
Offset:1
Orientation:forward strand
Alignment:CCCTTTGTYCHGCACC
-CCTTTGTT-------
 A G T C G A T C A G T C A C G T A C G T A C G T C T A G A G C T A G C T A G T C G T A C A C T G A G T C G T C A A G T C A G T C
A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:9
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--CCCTTTGTYCHGCACC
TGACCTTTGCCCTA----
 A C G T A C G T A G T C G A T C A G T C A C G T A C G T A C G T C T A G A G C T A G C T A G T C G T A C A C T G A G T C G T C A A G T C A G T C
A G C T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G T G A C G A T C G A T C G A C T T C G A A C G T A C G T A C G T A C G T

PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer

Match Rank:10
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--CCCTTTGTYCHGCACC
TGACCTTTGCCCCA----
 A C G T A C G T A G T C G A T C A G T C A C G T A C G T A C G T C T A G A G C T A G C T A G T C G T A C A C T G A G T C G T C A A G T C A G T C
C G A T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G G T A C G A T C G T A C G A T C G T C A A C G T A C G T A C G T A C G T