Information for 3-GTGTTTTGATGGGGTG (Motif 4)

A C T G A C G T A T C G A G C T A G C T A G C T A C G T A C T G G T C A A C G T A C T G T A C G A C T G A T C G A C G T T A C G
Reverse Opposite:
A G T C G T C A A T G C A G T C A G T C G T A C C G T A A C G T A G T C C G T A C T G A C T G A C T G A A T G C C G T A A G T C
p-value:1e-11
log p-value:-2.728e+01
Information Content per bp:1.785
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.91%
Number of Background Sequences with motif1.5
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets66.4 +/- 23.7bp
Average Position of motif in Background62.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0121.1_Foxj3_2/Jaspar

Match Rank:1
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----GTGTTTTGATGGGGTG
NNCTTTGTTTTGNTNNN---
 A C G T A C G T A C G T A C G T A C T G A C G T A T C G A G C T A G C T A G C T A C G T A C T G G T C A A C G T A C T G T A C G A C T G A T C G A C G T T A C G
G C A T A T G C G T A C C G A T G C A T C G A T C T A G C G A T C A G T C G A T A C G T C T A G C A T G G A C T T A C G G C A T A C G T A C G T A C G T A C G T

PH0026.1_Duxbl/Jaspar

Match Rank:2
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:GTGTTTTGATGGGGTG-
NNNNGTTGATTGGGTCG
 A C T G A C G T A T C G A G C T A G C T A G C T A C G T A C T G G T C A A C G T A C T G T A C G A C T G A T C G A C G T T A C G A C G T
A T G C C G T A A G T C A G T C T C A G G A C T C G A T C T A G C T G A A C G T A C G T C T A G T C A G T C A G G A C T G A T C T C A G

PB0122.1_Foxk1_2/Jaspar

Match Rank:3
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--GTGTTTTGATGGGGTG
NNNTGTTGTTGTTNG---
 A C G T A C G T A C T G A C G T A T C G A G C T A G C T A G C T A C G T A C T G G T C A A C G T A C T G T A C G A C T G A T C G A C G T T A C G
C T G A C A T G C T A G G C A T C T A G G C A T A C G T C T A G A G C T A C G T C T A G G A C T C A G T C G A T C A T G A C G T A C G T A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:4
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:GTGTTTTGATGGGGTG
-TNTCCTGCTGTGNNG
 A C T G A C G T A T C G A G C T A G C T A G C T A C G T A C T G G T C A A C G T A C T G T A C G A C T G A T C G A C G T T A C G
A C G T G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G

PB0206.1_Zic2_2/Jaspar

Match Rank:5
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:GTGTTTTGATGGGGTG
-TCNCCTGCTGNGNNN
 A C T G A C G T A T C G A G C T A G C T A G C T A C G T A C T G G T C A A C G T A C T G T A C G A C T G A T C G A C G T T A C G
A C G T G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G

NFYA/MA0060.2/Jaspar

Match Rank:6
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-GTGTTTTGATGGGGTG-
AGAGTGCTGATTGGTCCA
 A C G T A C T G A C G T A T C G A G C T A G C T A G C T A C G T A C T G G T C A A C G T A C T G T A C G A C T G A T C G A C G T T A C G A C G T
G C T A C A T G T G C A T A C G G A C T A C T G A G T C A G C T A T C G C T G A A G C T C G A T T C A G T A C G G A C T A G T C T A G C T C G A

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:7
Score:0.54
Offset:4
Orientation:forward strand
Alignment:GTGTTTTGATGGGGTG
----TTTTATKRGG--
 A C T G A C G T A T C G A G C T A G C T A G C T A C G T A C T G G T C A A C G T A C T G T A C G A C T G A T C G A C G T T A C G
A C G T A C G T A C G T A C G T C G A T A C G T A C G T A C G T C G T A A G C T C A G T C T A G A T C G A C T G A C G T A C G T

PH0134.1_Pbx1/Jaspar

Match Rank:8
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-GTGTTTTGATGGGGTG
NNNNNATTGATGNGTGN
 A C G T A C T G A C G T A T C G A G C T A G C T A G C T A C G T A C T G G T C A A C G T A C T G T A C G A C T G A T C G A C G T T A C G
A C G T A C T G G C A T C G A T C A G T G C T A C G A T A C G T A C T G C G T A G A C T A C T G C A T G C T A G G C A T T C A G C T G A

Dux/MA0611.1/Jaspar

Match Rank:9
Score:0.53
Offset:5
Orientation:reverse strand
Alignment:GTGTTTTGATGGGGTG
-----TTGATTGN---
 A C T G A C G T A T C G A G C T A G C T A G C T A C G T A C T G G T C A A C G T A C T G T A C G A C T G A T C G A C G T T A C G
A C G T A C G T A C G T A C G T A C G T G A C T A C G T A C T G C G T A A C G T A C G T C T A G A T C G A C G T A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:10
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:GTGTTTTGATGGGGTG
-CCCCCTGCTGTG---
 A C T G A C G T A T C G A G C T A G C T A G C T A C G T A C T G G T C A A C G T A C T G T A C G A C T G A T C G A C G T T A C G
A C G T G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T A C G T A C G T