Information for 3-GGAGGTTAGC (Motif 16)

A C T G A C T G C G T A A C T G C T A G A C G T A C G T C G T A A C T G A G T C
Reverse Opposite:
A C T G A G T C A C G T C G T A C G T A A G T C A G T C A C G T A G T C A G T C
p-value:1e-6
log p-value:-1.565e+01
Information Content per bp:1.959
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.72%
Number of Background Sequences with motif4.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets67.8 +/- 34.3bp
Average Position of motif in Background49.9 +/- 29.3bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0139.1_Pitx3/Jaspar

Match Rank:1
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--GGAGGTTAGC----
AGGGGGATTAGCTGCC
 A C G T A C G T A C T G A C T G C G T A A C T G C T A G A C G T A C G T C G T A A C T G A G T C A C G T A C G T A C G T A C G T
T C G A C T A G T A C G C T A G C T A G A C T G G T C A A G C T G A C T C G T A C A T G A T G C A C G T C T A G A T G C A T G C

Crx/MA0467.1/Jaspar

Match Rank:2
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--GGAGGTTAGC
AAGAGGATTAG-
 A C G T A C G T A C T G A C T G C G T A A C T G C T A G A C G T A C G T C G T A A C T G A G T C
T C G A C T G A C T A G T C G A C T A G A C T G G T C A A C G T A G C T C G T A C T A G A C G T

PH0015.1_Crx/Jaspar

Match Rank:3
Score:0.67
Offset:-4
Orientation:forward strand
Alignment:----GGAGGTTAGC--
CGTTGGGGATTAGCCT
 A C G T A C G T A C G T A C G T A C T G A C T G C G T A A C T G C T A G A C G T A C G T C G T A A C T G A G T C A C G T A C G T
A G T C A C T G C G A T C G A T T A C G T A C G C T A G A C T G G T C A A C G T C G A T C G T A C T A G A G T C A T G C C A G T

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:4
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:GGAGGTTAGC
--GGATTAGC
 A C T G A C T G C G T A A C T G C T A G A C G T A C G T C G T A A C T G A G T C
A C G T A C G T T C A G T A C G T G C A C A G T G C A T C G T A C T A G T A G C

GSC/MA0648.1/Jaspar

Match Rank:5
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:GGAGGTTAGC
NNGGATTAGN
 A C T G A C T G C G T A A C T G C T A G A C G T A C G T C G T A A C T G A G T C
C T A G T A C G T C A G T C A G T G C A A C G T G A C T C T G A C T A G A T G C

PH0123.1_Obox3/Jaspar

Match Rank:6
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----GGAGGTTAGC---
TGAGGGGGATTAACTAT
 A C G T A C G T A C G T A C G T A C T G A C T G C G T A A C T G C T A G A C G T A C G T C G T A A C T G A G T C A C G T A C G T A C G T
G C A T A T C G T C G A T A C G C T A G C T A G C T A G C A T G G C T A A C G T G A C T C G T A C G T A G T A C C G A T G T C A G A C T

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:7
Score:0.62
Offset:1
Orientation:forward strand
Alignment:GGAGGTTAGC
-RGGATTAR-
 A C T G A C T G C G T A A C T G C T A G A C G T A C G T C G T A A C T G A G T C
A C G T T C A G C T A G C T A G T G C A C G A T C G A T C G T A C T A G A C G T

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:8
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:GGAGGTTAGC
VRGGATTARN
 A C T G A C T G C G T A A C T G C T A G A C G T A C G T C G T A A C T G A G T C
T C G A C T A G C T A G C T A G G T C A A C G T C G A T C G T A C T G A T A G C

PH0121.1_Obox1/Jaspar

Match Rank:9
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----GGAGGTTAGC---
TTAAGGGGATTAACTAC
 A C G T A C G T A C G T A C G T A C T G A C T G C G T A A C T G C T A G A C G T A C G T C G T A A C T G A G T C A C G T A C G T A C G T
C A G T C G A T T C G A T C G A C T A G C T A G C T A G A C T G G T C A A G C T G A C T C G T A C G T A G T A C C G A T G C T A A G T C

PH0122.1_Obox2/Jaspar

Match Rank:10
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----GGAGGTTAGC---
TGAGGGGGATTAACTAT
 A C G T A C G T A C G T A C G T A C T G A C T G C G T A A C T G C T A G A C G T A C G T C G T A A C T G A G T C A C G T A C G T A C G T
C G A T A C T G T C G A C T A G C T A G C T A G C T A G C A T G G T C A C A G T G C A T C G T A C G T A G T A C C G A T G T C A G A C T