Information for 8-SKSCRGCCAKYCAGCT (Motif 11)

A T C G A C G T A T C G A G T C C T A G A C T G A G T C A G T C C G T A C A G T A G T C A G T C C G T A A C T G A G T C A C G T
Reverse Opposite:
C G T A A C T G A G T C A C G T A C T G C T A G G T A C A C G T A C T G C T A G A G T C G A C T A C T G T A C G G T C A T A G C
p-value:1e-9
log p-value:-2.117e+01
Information Content per bp:1.833
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.72%
Number of Background Sequences with motif1.3
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets60.5 +/- 19.7bp
Average Position of motif in Background13.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:1
Score:0.59
Offset:2
Orientation:forward strand
Alignment:SKSCRGCCAKYCAGCT
--SCTGTCAVTCAV--
 A T C G A C G T A T C G A G T C C T A G A C T G A G T C A G T C C G T A C A G T A G T C A G T C C G T A A C T G A G T C A C G T
A C G T A C G T T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A A C G T A C G T

NFYA/MA0060.2/Jaspar

Match Rank:2
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:SKSCRGCCAKYCAGCT----
--TGGACCAATCAGCACTCT
 A T C G A C G T A T C G A G T C C T A G A C T G A G T C A G T C C G T A C A G T A G T C A G T C C G T A A C T G A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A G C T A T C G T C A G C T G A A T G C A G T C C G T A T C G A G A C T T A G C T C G A T C A G T G A C C T G A A T G C A C G T G T A C C G A T

Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer

Match Rank:3
Score:0.59
Offset:8
Orientation:forward strand
Alignment:SKSCRGCCAKYCAGCT--
--------NAHCAGCTGD
 A T C G A C G T A T C G A G T C C T A G A C T G A G T C A G T C C G T A C A G T A G T C A G T C C G T A A C T G A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G T C A T G C A G C T A A G T C C G T A A C T G T G A C G C A T T C A G C A G T

POL004.1_CCAAT-box/Jaspar

Match Rank:4
Score:0.59
Offset:1
Orientation:forward strand
Alignment:SKSCRGCCAKYCAGCT
-ACTAGCCAATCA---
 A T C G A C G T A T C G A G T C C T A G A C T G A G T C A G T C C G T A C A G T A G T C A G T C C G T A A C T G A G T C A C G T
A C G T G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A A C G T A C G T A C G T

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:5
Score:0.58
Offset:1
Orientation:forward strand
Alignment:SKSCRGCCAKYCAGCT
-GSCTGTCACTCA---
 A T C G A C G T A T C G A G T C C T A G A C T G A G T C A G T C C G T A C A G T A G T C A G T C C G T A A C T G A G T C A C G T
A C G T C T A G A T G C A T G C C G A T A C T G G A C T A T G C G C T A T G A C A G C T T A G C G C T A A C G T A C G T A C G T

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:6
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:SKSCRGCCAKYCAGCT
TGGCAGNCTGCCAG--
 A T C G A C G T A T C G A G T C C T A G A C T G A G T C A G T C C G T A C A G T A G T C A G T C C G T A A C T G A G T C A C G T
C A G T A C T G A T C G T G A C G C T A A C T G T A G C G T A C C G A T A C T G T A G C G T A C G C T A T C A G A C G T A C G T

Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer

Match Rank:7
Score:0.57
Offset:10
Orientation:reverse strand
Alignment:SKSCRGCCAKYCAGCT----
----------CCAGCTGTTN
 A T C G A C G T A T C G A G T C C T A G A C T G A G T C A G T C C G T A C A G T A G T C A G T C C G T A A C T G A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T G A C G T A C C T G A A C T G T G A C G C A T C A T G A C G T A C G T G C T A

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:8
Score:0.57
Offset:2
Orientation:forward strand
Alignment:SKSCRGCCAKYCAGCT
--NCTGTCAATCAN--
 A T C G A C G T A T C G A G T C C T A G A C T G A G T C A G T C C G T A C A G T A G T C A G T C C G T A A C T G A G T C A C G T
A C G T A C G T T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A A C G T A C G T

NFY(CCAAT)/Promoter/Homer

Match Rank:9
Score:0.57
Offset:4
Orientation:forward strand
Alignment:SKSCRGCCAKYCAGCT
----AGCCAATCGG--
 A T C G A C G T A T C G A G T C C T A G A C T G A G T C A G T C C G T A C A G T A G T C A G T C C G T A A C T G A G T C A C G T
A C G T A C G T A C G T A C G T T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G A C G T A C G T

NFYB/MA0502.1/Jaspar

Match Rank:10
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-SKSCRGCCAKYCAGCT
AAATGGACCAATCAG--
 A C G T A T C G A C G T A T C G A G T C C T A G A C T G A G T C A G T C C G T A C A G T A G T C A G T C C G T A A C T G A G T C A C G T
T C G A G T C A G T C A A G C T A T C G T C A G C T G A A G T C A G T C C G T A C T G A A C G T T A G C T C G A T A C G A C G T A C G T