Information for 1-GTGTGAATAYGCTTAG (Motif 1)

T A C G A C G T A C T G A C G T A T C G C G T A C G T A G C A T T C G A A G T C A C T G A G T C A C G T G C A T C T G A C A T G
Reverse Opposite:
G T A C G A C T C G T A G T C A T A C G T G A C C T A G A C G T C G T A A C G T A C G T A T G C C G T A G T A C C G T A A G T C
p-value:1e-15
log p-value:-3.518e+01
Information Content per bp:1.707
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif1.27%
Number of Background Sequences with motif2.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets44.9 +/- 27.7bp
Average Position of motif in Background59.5 +/- 26.9bp
Strand Bias (log2 ratio + to - strand density)2.2
Multiplicity (# of sites on avg that occur together)1.57
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:1
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:GTGTGAATAYGCTTAG
-TTTGAAACCG-----
 T A C G A C G T A C T G A C G T A T C G C G T A C G T A G C A T T C G A A G T C A C T G A G T C A C G T G C A T C T G A C A T G
A C G T A C G T A C G T A C G T T A C G C G T A C T G A C G T A G T A C A G T C A T C G A C G T A C G T A C G T A C G T A C G T

LIN54/MA0619.1/Jaspar

Match Rank:2
Score:0.67
Offset:0
Orientation:forward strand
Alignment:GTGTGAATAYGCTTAG
ATTTGAATT-------
 T A C G A C G T A C T G A C G T A T C G C G T A C G T A G C A T T C G A A G T C A C T G A G T C A C G T G C A T C T G A C A T G
C G T A A C G T A C G T A G C T C T A G C G T A C G T A G A C T G A C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0013.1_Eomes_1/Jaspar

Match Rank:3
Score:0.67
Offset:-6
Orientation:forward strand
Alignment:------GTGTGAATAYGCTTAG
GAAAAGGTGTGAAAATT-----
 A C G T A C G T A C G T A C G T A C G T A C G T T A C G A C G T A C T G A C G T A T C G C G T A C G T A G C A T T C G A A G T C A C T G A G T C A C G T G C A T C T G A C A T G
A C G T T C G A G C T A C T G A C T G A C T A G A C T G A G C T C T A G G A C T A C T G C T G A G T C A G T C A G C T A G A C T G A C T A C G T A C G T A C G T A C G T A C G T

EOMES/MA0800.1/Jaspar

Match Rank:4
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---GTGTGAATAYGCTTAG
AAGGTGTGAAAAT------
 A C G T A C G T A C G T T A C G A C G T A C T G A C G T A T C G C G T A C G T A G C A T T C G A A G T C A C T G A G T C A C G T G C A T C T G A C A T G
C T G A C T G A C T A G A C T G A G C T T C A G G A C T A C T G T C G A G C T A G T C A C G T A G A C T A C G T A C G T A C G T A C G T A C G T A C G T

TBX21/MA0690.1/Jaspar

Match Rank:5
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---GTGTGAATAYGCTTAG
AAGGTGTGAA---------
 A C G T A C G T A C G T T A C G A C G T A C T G A C G T A T C G C G T A C G T A G C A T T C G A A G T C A C T G A G T C A C G T G C A T C T G A C A T G
C T G A C T G A C T A G A C T G A G C T C A T G G A C T A C T G C T G A G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

TBR1/MA0802.1/Jaspar

Match Rank:6
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--GTGTGAATAYGCTTAG
AGGTGTGAAA--------
 A C G T A C G T T A C G A C G T A C T G A C G T A T C G C G T A C G T A G C A T T C G A A G T C A C T G A G T C A C G T G C A T C T G A C A T G
C T G A C T A G A T C G A G C T A T C G G A C T A C T G C T G A G C T A G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0170.1_Sox17_2/Jaspar

Match Rank:7
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---GTGTGAATAYGCTTAG
NTTNTATGAATGTGNNC--
 A C G T A C G T A C G T T A C G A C G T A C T G A C G T A T C G C G T A C G T A G C A T T C G A A G T C A C T G A G T C A C G T G C A T C T G A C A T G
G C T A G C A T A G C T C T A G A G C T T C G A A G C T A C T G G C T A C T G A C G A T T C A G C A G T C A T G T C A G C G A T A T G C A C G T A C G T

TBX2/MA0688.1/Jaspar

Match Rank:8
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---GTGTGAATAYGCTTAG
AAGGTGTGAAA--------
 A C G T A C G T A C G T T A C G A C G T A C T G A C G T A T C G C G T A C G T A G C A T T C G A A G T C A C T G A G T C A C G T G C A T C T G A C A T G
C G T A C T G A T C A G A T C G A G C T C T A G G A C T A C T G C T G A C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

TBX20/MA0689.1/Jaspar

Match Rank:9
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---GTGTGAATAYGCTTAG
TAGGTGTGAAG--------
 A C G T A C G T A C G T T A C G A C G T A C T G A C G T A T C G C G T A C G T A G C A T T C G A A G T C A C T G A G T C A C G T G C A T C T G A C A T G
C G A T C T G A T C A G A C T G A C G T A C T G C A G T C A T G C G T A C G T A T C A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer

Match Rank:10
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--GTGTGAATAYGCTTAG
AGGTGTTAAT--------
 A C G T A C G T T A C G A C G T A C T G A C G T A T C G C G T A C G T A G C A T T C G A A G T C A C T G A G T C A C G T G C A T C T G A C A T G
C T G A C T A G A T C G C G A T C T A G G C A T A C G T C T G A C T G A C G A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T