Information for 11-RGTRCATGGWGTS (Motif 9)

C T G A A C T G A C G T C T G A A G T C C G T A C G A T A C T G A C T G C G A T A C T G A C G T A T C G
Reverse Opposite:
A T G C C G T A A G T C C G T A A G T C A G T C C G T A A C G T A C T G A G C T G T C A A G T C A G C T
p-value:1e-11
log p-value:-2.641e+01
Information Content per bp:1.875
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.68%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets52.0 +/- 24.7bp
Average Position of motif in Background39.4 +/- 19.7bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Ar/MA0007.3/Jaspar

Match Rank:1
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-RGTRCATGGWGTS---
GGGAACACGGTGTACCC
 A C G T C T G A A C T G A C G T C T G A A G T C C G T A C G A T A C T G A C T G C G A T A C T G A C G T A T C G A C G T A C G T A C G T
C T A G C T A G C T A G G C T A G T C A T A G C T C G A A G T C T A C G T C A G G A C T A T C G G C A T C G T A G A T C G A T C G A T C

NR3C1/MA0113.3/Jaspar

Match Rank:2
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-RGTRCATGGWGTS---
GGGTACATAATGTTCCC
 A C G T C T G A A C T G A C G T C T G A A G T C C G T A C G A T A C T G A C T G C G A T A C T G A C G T A T C G A C G T A C G T A C G T
C T A G C T A G C T A G C G A T C G T A A T G C C T G A G A C T C G T A C T G A G A C T A T C G A C G T G C A T G A T C G A T C G T A C

NR3C2/MA0727.1/Jaspar

Match Rank:3
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-RGTRCATGGWGTS---
GGGAACATTGTGTTCCC
 A C G T C T G A A C T G A C G T C T G A A G T C C G T A C G A T A C T G A C T G C G A T A C T G A C G T A T C G A C G T A C G T A C G T
C A T G T C A G C T A G C G T A C T G A A T G C C T G A G A C T G C A T C T A G G A C T A T C G A C G T G C A T G T A C G A T C G T A C

Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer

Match Rank:4
Score:0.64
Offset:5
Orientation:reverse strand
Alignment:RGTRCATGGWGTS--
-----ATGGGGTGAT
 C T G A A C T G A C G T C T G A A G T C C G T A C G A T A C T G A C T G C G A T A C T G A C G T A T C G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T C G A A G C T C A T G A C T G A T C G T A C G G A C T A T C G C G T A A G C T

GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer

Match Rank:5
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-RGTRCATGGWGTS-
VAGRACAKWCTGTYC
 A C G T C T G A A C T G A C G T C T G A A G T C C G T A C G A T A C T G A C T G C G A T A C T G A C G T A T C G A C G T
T G A C C T G A C T A G C T G A C G T A A G T C C T G A A C G T G C A T T A G C G C A T A T C G G A C T G A C T G A T C

GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer

Match Rank:6
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:RGTRCATGGWGTS---
AGNACANNNTGTNCTN
 C T G A A C T G A C G T C T G A A G T C C G T A C G A T A C T G A C T G C G A T A C T G A C G T A T C G A C G T A C G T A C G T
C T G A C T A G T C G A C G T A A G T C C T G A A T C G C G T A T A G C G A C T A C T G A C G T A G C T A G T C G A C T A T G C

ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:7
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-RGTRCATGGWGTS--
NAGAACAGNCTGTNCT
 A C G T C T G A A C T G A C G T C T G A A G T C C G T A C G A T A C T G A C T G C G A T A C T G A C G T A T C G A C G T A C G T
T C G A C T G A C T A G T C G A C G T A A T G C C G T A A T C G G C A T T A G C G C A T A T C G G C A T A G C T G A T C G A C T

PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer

Match Rank:8
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-RGTRCATGGWGTS-
VAGRACAKNCTGTBC
 A C G T C T G A A C T G A C G T C T G A A G T C C G T A C G A T A C T G A C T G C G A T A C T G A C G T A T C G A C G T
T G A C C T G A C T A G T C G A C T G A A T G C C G T A A C T G G C A T G T A C G C A T A T C G G C A T A G C T G A T C

SREBF2/MA0596.1/Jaspar

Match Rank:9
Score:0.59
Offset:5
Orientation:forward strand
Alignment:RGTRCATGGWGTS--
-----ATGGGGTGAT
 C T G A A C T G A C G T C T G A A G T C C G T A C G A T A C T G A C T G C G A T A C T G A C G T A T C G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T C G A A C G T A T C G C T A G A T C G T A C G A C G T A C T G C G T A A G C T

Vdr/MA0693.1/Jaspar

Match Rank:10
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-RGTRCATGGWGTS--
GAGTTCATTGAGTTCA
 A C G T C T G A A C T G A C G T C T G A A G T C C G T A C G A T A C T G A C T G C G A T A C T G A C G T A T C G A C G T A C G T
T C A G T C G A C A T G A C G T A C G T A G T C C T G A G A C T G A C T T C A G T C G A C T A G A C G T A C G T A G T C C T G A