Information for 5-GCCATTGCGT (Motif 6)

C T A G A G T C A G T C G T C A A C G T A G C T A C T G G T A C C T A G A C G T
Reverse Opposite:
G T C A G A T C C A T G A G T C C T G A G T C A A C G T A C T G C T A G A G T C
p-value:1e-10
log p-value:-2.444e+01
Information Content per bp:1.844
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.73%
Number of Background Sequences with motif3.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets49.0 +/- 15.5bp
Average Position of motif in Background52.5 +/- 28.7bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0168.1_Sox14_2/Jaspar

Match Rank:1
Score:0.70
Offset:-2
Orientation:reverse strand
Alignment:--GCCATTGCGT---
NNNCCATTGTGTNAN
 A C G T A C G T C T A G A G T C A G T C G T C A A C G T A G C T A C T G G T A C C T A G A C G T A C G T A C G T A C G T
A T C G T G A C A C T G A G T C G A T C C G T A A C G T A C G T T A C G G C A T A T C G A G C T T C A G T G C A T C A G

YY2/MA0748.1/Jaspar

Match Rank:2
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----GCCATTGCGT
GTCCGCCATTA---
 A C G T A C G T A C G T A C G T C T A G A G T C A G T C G T C A A C G T A G C T A C T G G T A C C T A G A C G T
C T A G C G A T G A T C A T G C T A C G T G A C A G T C C G T A C G A T G A C T C G T A A C G T A C G T A C G T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:3
Score:0.66
Offset:1
Orientation:forward strand
Alignment:GCCATTGCGT-
-CCATTGTTYB
 C T A G A G T C A G T C G T C A A C G T A G C T A C T G G T A C C T A G A C G T A C G T
A C G T A T G C G A T C C G T A A G C T C A G T A T C G G C A T A G C T G A C T A C T G

MF0006.1_bZIP_cEBP-like_subclass/Jaspar

Match Rank:4
Score:0.65
Offset:3
Orientation:forward strand
Alignment:GCCATTGCGT--
---ATTGCATAA
 C T A G A G T C A G T C G T C A A C G T A G C T A C T G G T A C C T A G A C G T A C G T A C G T
A C G T A C G T A C G T T C G A G A C T A C G T C T A G G A T C T C G A G A C T G T C A G C T A

Ddit3::Cebpa/MA0019.1/Jaspar

Match Rank:5
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:GCCATTGCGT--
GGGATTGCATNN
 C T A G A G T C A G T C G T C A A C G T A G C T A C T G G T A C C T A G A C G T A C G T A C G T
T C A G A T C G A C T G C T G A A C G T A C G T C A T G G T A C C T G A A G C T A G T C A G C T

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:6
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:GCCATTGCGT
NCCATTGTTY
 C T A G A G T C A G T C G T C A A C G T A G C T A C T G G T A C C T A G A C G T
C T A G A G T C G A T C G C T A C G A T A C G T A T C G A C G T A G C T G A C T

Sox2/MA0143.3/Jaspar

Match Rank:7
Score:0.63
Offset:1
Orientation:forward strand
Alignment:GCCATTGCGT
-CCTTTGTT-
 C T A G A G T C A G T C G T C A A C G T A G C T A C T G G T A C C T A G A C G T
A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A C G T

PB0132.1_Hbp1_2/Jaspar

Match Rank:8
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----GCCATTGCGT---
TGTTCCCATTGTGTACT
 A C G T A C G T A C G T A C G T C T A G A G T C A G T C G T C A A C G T A G C T A C T G G T A C C T A G A C G T A C G T A C G T A C G T
C G A T C T A G C A G T A G C T A G T C G A T C G A T C C G T A G A C T C G A T C A T G C A G T T C A G G A C T C T G A A T G C G C A T

CEBPD/MA0836.1/Jaspar

Match Rank:9
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:GCCATTGCGT---
---ATTGCGCAAT
 C T A G A G T C A G T C G T C A A C G T A G C T A C T G G T A C C T A G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T C G A A C G T C A G T C A T G A G T C C T A G G A T C G T C A G T C A A G C T

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:10
Score:0.62
Offset:4
Orientation:reverse strand
Alignment:GCCATTGCGT----
----TTGCGTGCVA
 C T A G A G T C A G T C G T C A A C G T A G C T A C T G G T A C C T A G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C A G T A C T G A G T C T C A G C G A T C A T G G T A C T A G C C G T A