Information for 3-CCTGCYGRGMRMTGYR (Motif 5)

A G T C A G T C A C G T C T A G A G T C A G T C A C T G C T A G A C T G T G A C C T A G G T A C C G A T A C T G A G C T C T G A
Reverse Opposite:
A G C T C T G A A G T C C G T A A C T G A G T C A C T G A G T C A G C T A G T C C T A G A C T G A G T C C G T A A C T G A C T G
p-value:1e-13
log p-value:-3.192e+01
Information Content per bp:1.825
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.83%
Number of Background Sequences with motif2.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets44.4 +/- 32.0bp
Average Position of motif in Background55.0 +/- 4.9bp
Strand Bias (log2 ratio + to - strand density)2.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.73
Offset:-3
Orientation:reverse strand
Alignment:---CCTGCYGRGMRMTGYR
CCCCCTGCTGTG-------
 A C G T A C G T A C G T A G T C A G T C A C G T C T A G A G T C A G T C A C T G C T A G A C T G T G A C C T A G G T A C C G A T A C T G A G C T C T G A
G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:2
Score:0.73
Offset:-5
Orientation:forward strand
Alignment:-----CCTGCYGRGMRMTGYR
GGCCYCCTGCTGDGH------
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C A C G T C T A G A G T C A G T C A C T G C T A G A C T G T G A C C T A G G T A C C G A T A C T G A G C T C T G A
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C A C G T A C G T A C G T A C G T A C G T A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:3
Score:0.72
Offset:-3
Orientation:reverse strand
Alignment:---CCTGCYGRGMRMTGYR
TCNCCTGCTGNGNNN----
 A C G T A C G T A C G T A G T C A G T C A C G T C T A G A G T C A G T C A C T G C T A G A C T G T G A C C T A G G T A C C G A T A C T G A G C T C T G A
G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G A C G T A C G T A C G T A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:4
Score:0.72
Offset:0
Orientation:forward strand
Alignment:CCTGCYGRGMRMTGYR
CCTGCTGAGH------
 A G T C A G T C A C G T C T A G A G T C A G T C A C T G C T A G A C T G T G A C C T A G G T A C C G A T A C T G A G C T C T G A
A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A A C G T A C G T A C G T A C G T A C G T A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:5
Score:0.72
Offset:-3
Orientation:reverse strand
Alignment:---CCTGCYGRGMRMTGYR
TNTCCTGCTGTGNNG----
 A C G T A C G T A C G T A G T C A G T C A C G T C T A G A G T C A G T C A C T G C T A G A C T G T G A C C T A G G T A C C G A T A C T G A G C T C T G A
G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G A C G T A C G T A C G T A C G T

PB0207.1_Zic3_2/Jaspar

Match Rank:6
Score:0.69
Offset:-3
Orientation:reverse strand
Alignment:---CCTGCYGRGMRMTGYR
NNTCCTGCTGTGNNN----
 A C G T A C G T A C G T A G T C A G T C A C G T C T A G A G T C A G T C A C T G C T A G A C T G T G A C C T A G G T A C C G A T A C T G A G C T C T G A
G C A T A T C G C A G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G G A C T A C T G G A T C G C A T G T A C A C G T A C G T A C G T A C G T

GFY-Staf(?,Zf)/Promoter/Homer

Match Rank:7
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-CCTGCYGRGMRMTGYR---
GCATTCTGGGAATTGTAGTT
 A C G T A G T C A G T C A C G T C T A G A G T C A G T C A C T G C T A G A C T G T G A C C T A G G T A C C G A T A C T G A G C T C T G A A C G T A C G T A C G T
T C A G T A G C G T C A A G C T A C G T A G T C A G C T A C T G A C T G C T A G C G T A C T G A C G A T A G C T A C T G A C G T C T G A A C T G A C G T A G C T

Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer

Match Rank:8
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-CCTGCYGRGMRMTGYR---
GCMTBCTGGGAGTTGTAGTY
 A C G T A G T C A G T C A C G T C T A G A G T C A G T C A C T G C T A G A C T G T G A C C T A G G T A C C G A T A C T G A G C T C T G A A C G T A C G T A C G T
C A T G T A G C G T A C A G C T A C G T T G A C A G C T C T A G A C T G C T A G C G T A T C A G G C A T A G C T A C T G C G A T C T G A A C T G A C G T A G T C

ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer

Match Rank:9
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--CCTGCYGRGMRMTGYR
RGSMTBCTGGGAAAT---
 A C G T A C G T A G T C A G T C A C G T C T A G A G T C A G T C A C T G C T A G A C T G T G A C C T A G G T A C C G A T A C T G A G C T C T G A
C T A G A C T G T A G C G T C A A G C T A G C T T G A C G A C T A C T G A C T G A C T G C G T A T C G A C G T A A C G T A C G T A C G T A C G T

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:10
Score:0.57
Offset:-5
Orientation:forward strand
Alignment:-----CCTGCYGRGMRMTGYR
SNGCACCTGCHS---------
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C A C G T C T A G A G T C A G T C A C T G C T A G A C T G T G A C C T A G G T A C C G A T A C T G A G C T C T G A
T A C G C T A G T A C G A G T C C G T A A G T C A G T C A C G T A C T G A G T C G A T C T A G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T