Information for 5-CCAGAGTGTT (Motif 6)

A T G C A G T C C G T A A C T G T G C A A T C G A G C T A C T G C A G T A C G T
Reverse Opposite:
C G T A G T C A A G T C T C G A A T G C A C G T T G A C G C A T A C T G A T C G
p-value:1e-12
log p-value:-2.805e+01
Information Content per bp:1.748
Number of Target Sequences with motif36.0
Percentage of Target Sequences with motif4.28%
Number of Background Sequences with motif465.3
Percentage of Background Sequences with motif0.99%
Average Position of motif in Targets46.0 +/- 27.1bp
Average Position of motif in Background50.1 +/- 31.2bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

GLI2/MA0734.1/Jaspar

Match Rank:1
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:CCAGAGTGTT---
-CAGTGTGGTCGC
 A T G C A G T C C G T A A C T G T G C A A T C G A G C T A C T G C A G T A C G T A C G T A C G T A C G T
A C G T G A T C G C T A C A T G A C G T A T C G C A G T T A C G C T A G A C G T G T A C A C T G G A T C

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:2
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:CCAGAGTGTT-
CTTGAGTGGCT
 A T G C A G T C C G T A A C T G T G C A A T C G A G C T A C T G C A G T A C G T A C G T
A T G C G A C T C A G T C T A G C G T A A C T G C G A T A C T G A T C G G A T C G A C T

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:3
Score:0.56
Offset:1
Orientation:forward strand
Alignment:CCAGAGTGTT-
-TTRAGTGSYK
 A T G C A G T C C G T A A C T G T G C A A T C G A G C T A C T G C A G T A C G T A C G T
A C G T A G C T G A C T C T A G C G T A C A T G C G A T C T A G A T C G G A C T C A G T

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:4
Score:0.56
Offset:2
Orientation:forward strand
Alignment:CCAGAGTGTT
--TGCGTG--
 A T G C A G T C C G T A A C T G T G C A A T C G A G C T A C T G C A G T A C G T
A C G T A C G T G A C T A C T G A G T C A C T G A C G T A C T G A C G T A C G T

GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer

Match Rank:5
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--CCAGAGTGTT---
GRACAGWMTGTYCTB
 A C G T A C G T A T G C A G T C C G T A A C T G T G C A A T C G A G C T A C T G C A G T A C G T A C G T A C G T A C G T
C T A G C T G A C T G A T A G C C G T A A T C G C G T A T G C A G A C T T C A G G C A T G A C T G A T C G A C T A C T G

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:6
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--CCAGAGTGTT
DCTCAGCAGG--
 A C G T A C G T A T G C A G T C C G T A A C T G T G C A A T C G A G C T A C T G C A G T A C G T
C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T A C G T

GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer

Match Rank:7
Score:0.53
Offset:0
Orientation:forward strand
Alignment:CCAGAGTGTT--
CGTGGGTGGTCC
 A T G C A G T C C G T A A C T G T G C A A T C G A G C T A C T G C A G T A C G T A C G T A C G T
A G T C A T C G G C A T C T A G A C T G T A C G C G A T T C A G C A T G A G C T T A G C G A T C

ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:8
Score:0.53
Offset:-3
Orientation:forward strand
Alignment:---CCAGAGTGTT---
AGNACAGNCTGTTCTN
 A C G T A C G T A C G T A T G C A G T C C G T A A C T G T G C A A T C G A G C T A C T G C A G T A C G T A C G T A C G T A C G T
C T G A C T A G T C G A C G T A A T G C C G T A A T C G C G A T T A G C G C A T A T C G G C A T A G C T G A T C G A C T A G C T

PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer

Match Rank:9
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--CCAGAGTGTT---
GVACAGNMTGTYCTB
 A C G T A C G T A T G C A G T C C G T A A C T G T G C A A T C G A G C T A C T G C A G T A C G T A C G T A C G T A C G T
C T A G T C G A C G T A T A G C C G T A C A T G C G T A T G A C G C A T T A C G G A C T A G C T G A T C G A C T A C T G

PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer

Match Rank:10
Score:0.52
Offset:-2
Orientation:reverse strand
Alignment:--CCAGAGTGTT---
GAACADWATGTTCTT
 A C G T A C G T A T G C A G T C C G T A A C T G T G C A A T C G A G C T A C T G C A G T A C G T A C G T A C G T A C G T
C T A G C G T A C G T A A G T C C G T A C A G T C G T A G T C A C G A T A C T G A C G T G C A T A G T C G A C T G C A T