Information for 8-TGCAAGTCGGGCA (Motif 12)

A C G T C T A G A G T C G T C A C G T A A C T G A C G T G T A C A C T G A C T G A C T G G T A C C G T A
Reverse Opposite:
C G A T A C T G A G T C A G T C A G T C A C T G C G T A A G T C A C G T A C G T A C T G A G T C C G T A
p-value:1e-10
log p-value:-2.495e+01
Information Content per bp:1.929
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.59%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets41.6 +/- 25.7bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0133.1_Hic1_2/Jaspar

Match Rank:1
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:TGCAAGTCGGGCA-----
--NNNNTTGGGCACNNCN
 A C G T C T A G A G T C G T C A C G T A A C T G A C G T G T A C A C T G A C T G A C T G G T A C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A G T C G A T C C A G T G C A T G C A T C A G T A C T G A C T G A C T G A G T C C G T A G A T C G T C A G T A C T A G C G T A C

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:2
Score:0.60
Offset:3
Orientation:forward strand
Alignment:TGCAAGTCGGGCA
---AAYTAGGTCA
 A C G T C T A G A G T C G T C A C G T A A C T G A C G T G T A C A C T G A C T G A C T G G T A C C G T A
A C G T A C G T A C G T G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A

TFAP2B(var.3)/MA0813.1/Jaspar

Match Rank:3
Score:0.58
Offset:0
Orientation:forward strand
Alignment:TGCAAGTCGGGCA
TGCCCTGAGGGCA
 A C G T C T A G A G T C G T C A C G T A A C T G A C G T G T A C A C T G A C T G A C T G G T A C C G T A
G C A T A T C G A G T C A G T C A G T C A G C T A C T G T C G A T C A G A C T G A C T G A T G C C G T A

TFAP2A(var.3)/MA0872.1/Jaspar

Match Rank:4
Score:0.58
Offset:0
Orientation:forward strand
Alignment:TGCAAGTCGGGCA
TGCCCTGAGGGCA
 A C G T C T A G A G T C G T C A C G T A A C T G A C G T G T A C A C T G A C T G A C T G G T A C C G T A
G C A T A T C G A G T C A G T C A G T C A G C T A T C G T C G A T C A G A C T G A C T G A T G C C G T A

HIC2/MA0738.1/Jaspar

Match Rank:5
Score:0.58
Offset:5
Orientation:reverse strand
Alignment:TGCAAGTCGGGCA-
-----NGTGGGCAT
 A C G T C T A G A G T C G T C A C G T A A C T G A C G T G T A C A C T G A C T G A C T G G T A C C G T A A C G T
A C G T A C G T A C G T A C G T A C G T T C A G A T C G A G C T A C T G C A T G A C T G A G T C C T G A A G C T

TFAP2C(var.3)/MA0815.1/Jaspar

Match Rank:6
Score:0.57
Offset:0
Orientation:forward strand
Alignment:TGCAAGTCGGGCA
TGCCCTGAGGGCA
 A C G T C T A G A G T C G T C A C G T A A C T G A C G T G T A C A C T G A C T G A C T G G T A C C G T A
G C A T A T C G A G T C A G T C A G T C A G C T A T C G T C G A T C A G A C T G A C T G A T G C C G T A

RORA(var.2)/MA0072.1/Jaspar

Match Rank:7
Score:0.55
Offset:0
Orientation:forward strand
Alignment:TGCAAGTCGGGCA-
TATAAGTAGGTCAA
 A C G T C T A G A G T C G T C A C G T A A C T G A C G T G T A C A C T G A C T G A C T G G T A C C G T A A C G T
C G A T C G T A C G A T G T C A C G T A A T C G A C G T C T G A A C T G A C T G A C G T A G T C C G T A T C G A

THAP1/MA0597.1/Jaspar

Match Rank:8
Score:0.55
Offset:5
Orientation:reverse strand
Alignment:TGCAAGTCGGGCA-
-----TNNGGGCAG
 A C G T C T A G A G T C G T C A C G T A A C T G A C G T G T A C A C T G A C T G A C T G G T A C C G T A A C G T
A C G T A C G T A C G T A C G T A C G T C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:9
Score:0.52
Offset:-2
Orientation:forward strand
Alignment:--TGCAAGTCGGGCA
AAGGCAAGTGT----
 A C G T A C G T A C G T C T A G A G T C G T C A C G T A A C T G A C G T G T A C A C T G A C T G A C T G G T A C C G T A
T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T A C G T A C G T A C G T A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.51
Offset:4
Orientation:reverse strand
Alignment:TGCAAGTCGGGCA---
----TGTCTGDCACCT
 A C G T C T A G A G T C G T C A C G T A A C T G A C G T G T A C A C T G A C T G A C T G G T A C C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T