Information for 3-AGTTGCCTGGCCTAGA (Motif 3)

C G T A A C T G G A C T A C G T A T C G A T G C A G T C A C G T C T A G C T A G A T G C T G A C C G A T G T C A C T A G C G T A
Reverse Opposite:
A C G T A G T C A C G T C G T A A C T G A T C G A G T C A G T C C G T A A C T G A T C G A T G C G T C A C G T A T A G C G A C T
p-value:1e-13
log p-value:-3.156e+01
Information Content per bp:1.739
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.78%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets60.5 +/- 22.5bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--AGTTGCCTGGCCTAGA
NNACTTGCCTT-------
 A C G T A C G T C G T A A C T G G A C T A C G T A T C G A T G C A G T C A C G T C T A G C T A G A T G C T G A C C G A T G T C A C T A G C G T A
T C G A G A T C T G C A A G T C G A C T A G C T A C T G A G T C G A T C G C A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:2
Score:0.59
Offset:3
Orientation:forward strand
Alignment:AGTTGCCTGGCCTAGA
---WDNCTGGGCA---
 C G T A A C T G G A C T A C G T A T C G A T G C A G T C A C G T C T A G C T A G A T G C T G A C C G A T G T C A C T A G C G T A
A C G T A C G T A C G T G C A T C T A G G T A C A G T C C G A T A C T G C T A G C T A G G T A C G C T A A C G T A C G T A C G T

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:3
Score:0.58
Offset:2
Orientation:forward strand
Alignment:AGTTGCCTGGCCTAGA
--AGGCCTAG------
 C G T A A C T G G A C T A C G T A T C G A T G C A G T C A C G T C T A G C T A G A T G C T G A C C G A T G T C A C T A G C G T A
A C G T A C G T T G C A A C T G T A C G A T G C A G T C G A C T T C G A A T C G A C G T A C G T A C G T A C G T A C G T A C G T

p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer

Match Rank:4
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:AGTTGCCTGGCCTAGA
--ATGCCCGGGCATGT
 C G T A A C T G G A C T A C G T A T C G A T G C A G T C A C G T C T A G C T A G A T G C T G A C C G A T G T C A C T A G C G T A
A C G T A C G T G T C A C G A T A C T G A G T C A G T C G A T C C T A G C T A G T C A G A T G C G C T A C G A T A T C G G A C T

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:5
Score:0.56
Offset:2
Orientation:forward strand
Alignment:AGTTGCCTGGCCTAGA
--AGGCCTNG------
 C G T A A C T G G A C T A C G T A T C G A T G C A G T C A C G T C T A G C T A G A T G C T G A C C G A T G T C A C T A G C G T A
A C G T A C G T C T G A A C T G A C T G A G T C A G T C A G C T C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:6
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--AGTTGCCTGGCCTAGA
NNTNNTGTCTGGNNTNG-
 A C G T A C G T C G T A A C T G G A C T A C G T A T C G A T G C A G T C A C G T C T A G C T A G A T G C T G A C C G A T G T C A C T A G C G T A
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:7
Score:0.53
Offset:3
Orientation:forward strand
Alignment:AGTTGCCTGGCCTAGA
---GGTCTGGCAT---
 C G T A A C T G G A C T A C G T A T C G A T G C A G T C A C G T C T A G C T A G A T G C T G A C C G A T G T C A C T A G C G T A
A C G T A C G T A C G T A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T A C G T A C G T A C G T

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:8
Score:0.52
Offset:0
Orientation:forward strand
Alignment:AGTTGCCTGGCCTAGA
NGTTGCCATGGCAA--
 C G T A A C T G G A C T A C G T A T C G A T G C A G T C A C G T C T A G C T A G A T G C T G A C C G A T G T C A C T A G C G T A
A C T G T C A G A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A C G T A C G T

Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer

Match Rank:9
Score:0.52
Offset:0
Orientation:forward strand
Alignment:AGTTGCCTGGCCTAGA
TGTTKCCTAGCAACM-
 C G T A A C T G G A C T A C G T A T C G A T G C A G T C A C G T C T A G C T A G A T G C T G A C C G A T G T C A C T A G C G T A
C A G T T C A G A G C T G A C T A C G T A G T C G A T C G A C T C T G A A C T G G A T C C G T A C T G A A G T C G T A C A C G T

Nr5a2/MA0505.1/Jaspar

Match Rank:10
Score:0.52
Offset:5
Orientation:reverse strand
Alignment:AGTTGCCTGGCCTAGA----
-----GCTGACCTTGAACTN
 C G T A A C T G G A C T A C G T A T C G A T G C A G T C A C G T C T A G C T A G A T G C T G A C C G A T G T C A C T A G C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T A C G T G A C G C A T T C A G C T G A A G T C A G T C A G C T C A G T A T C G C T G A T C G A G A T C G A C T A G C T