Information for 9-CAGCCAAGGCCTT (Motif 28)

A G T C C G T A A C T G A G T C A G T C C G T A C G T A A T C G A C T G A G T C A G T C C G A T A C G T
Reverse Opposite:
G T C A C G T A A C T G A C T G A G T C A T G C A C G T A C G T A C T G A C T G A G T C A C G T A C T G
p-value:1e-8
log p-value:-2.013e+01
Information Content per bp:1.924
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.65%
Number of Background Sequences with motif3.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets57.4 +/- 23.0bp
Average Position of motif in Background36.3 +/- 37.3bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Zfx/MA0146.2/Jaspar

Match Rank:1
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-CAGCCAAGGCCTT
GGGGCCGAGGCCTG
 A C G T A G T C C G T A A C T G A G T C A G T C C G T A C G T A A T C G A C T G A G T C A G T C C G A T A C G T
A T C G A T C G T A C G C T A G A T G C G A T C A C T G T G C A T C A G A T C G A G T C A G T C A G C T T A C G

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:2
Score:0.67
Offset:2
Orientation:forward strand
Alignment:CAGCCAAGGCCTT
--NTCAAGGTCA-
 A G T C C G T A A C T G A G T C A G T C C G T A C G T A A T C G A C T G A G T C A G T C C G A T A C G T
A C G T A C G T A C G T G A C T A T G C G C T A C T G A C T A G A C T G G A C T A G T C C G T A A C G T

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:3
Score:0.66
Offset:4
Orientation:reverse strand
Alignment:CAGCCAAGGCCTT
----CNAGGCCT-
 A G T C C G T A A C T G A G T C A G T C C G T A C G T A A T C G A C T G A G T C A G T C C G A T A C G T
A C G T A C G T A C G T A C G T A T G C G A T C C T G A A C T G A C T G A G T C A G T C A G C T A C G T

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:4
Score:0.64
Offset:4
Orientation:reverse strand
Alignment:CAGCCAAGGCCTT
----CTAGGCCT-
 A G T C C G T A A C T G A G T C A G T C C G T A C G T A A T C G A C T G A G T C A G T C C G A T A C G T
A C G T A C G T A C G T A C G T T A G C A G C T C T G A A C T G A T C G A T G C G T A C A C G T A C G T

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:5
Score:0.64
Offset:2
Orientation:forward strand
Alignment:CAGCCAAGGCCTT
--BTCAAGGTCA-
 A G T C C G T A A C T G A G T C A G T C C G T A C G T A A T C G A C T G A G T C A G T C C G A T A C G T
A C G T A C G T A C G T G A C T T A G C C G T A C T G A C A T G C T A G G A C T G A T C C G T A A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:6
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-CAGCCAAGGCCTT
BCAGACWA------
 A C G T A G T C C G T A A C T G A G T C A G T C C G T A C G T A A T C G A C T G A G T C A G T C C G A T A C G T
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:7
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:CAGCCAAGGCCTT
-TGCCAA------
 A G T C C G T A A C T G A G T C A G T C C G T A C G T A A T C G A C T G A G T C A G T C C G A T A C G T
A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T A C G T A C G T

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:8
Score:0.62
Offset:4
Orientation:forward strand
Alignment:CAGCCAAGGCCTT-
----CAAGGHCANV
 A G T C C G T A A C T G A G T C A G T C C G T A C G T A A T C G A C T G A G T C A G T C C G A T A C G T A C G T
A C G T A C G T A C G T A C G T T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G

NFIX/MA0671.1/Jaspar

Match Rank:9
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-CAGCCAAGGCCTT
CGTGCCAAG-----
 A C G T A G T C C G T A A C T G A G T C A G T C C G T A C G T A A T C G A C T G A G T C A G T C C G A T A C G T
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T A C G T A C G T

PB0014.1_Esrra_1/Jaspar

Match Rank:10
Score:0.57
Offset:0
Orientation:forward strand
Alignment:CAGCCAAGGCCTT----
TATTCAAGGTCATGCGA
 A G T C C G T A A C T G A G T C A G T C C G T A C G T A A T C G A C T G A G T C A G T C C G A T A C G T A C G T A C G T A C G T A C G T
C A G T G T C A A C G T A G C T T A G C C T G A C T G A C A T G C A T G C A G T A G T C C T G A G C A T T C A G A G T C A C T G G T C A