Information for 5-GCCCWRTTGCTWA (Motif 21)

A C T G A G T C A G T C A G T C C G A T T C A G A C G T A C G T A C T G A G T C A C G T C G T A C G T A
Reverse Opposite:
A C G T G C A T C G T A A C T G A G T C C G T A C G T A A G T C C G T A A C T G A C T G A C T G A G T C
p-value:1e-9
log p-value:-2.215e+01
Information Content per bp:1.897
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.65%
Number of Background Sequences with motif2.3
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets54.6 +/- 28.5bp
Average Position of motif in Background70.2 +/- 26.4bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:1
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:GCCCWRTTGCTWA--
---CTGTTGCTAGGS
 A C T G A G T C A G T C A G T C C G A T T C A G A C G T A C G T A C T G A G T C A C G T C G T A C G T A A C G T A C G T
A C G T A C G T A C G T A G T C C G A T A C T G A C G T G A C T C T A G A G T C A G C T C T G A C A T G C T A G T A C G

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:2
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:GCCCWRTTGCTWA----
--NCCGTTGCTANGNGN
 A C T G A G T C A G T C A G T C C G A T T C A G A C G T A C G T A C T G A G T C A C G T C G T A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T G A C T A G T C A T G C C T A G A C G T G A C T C T A G G A T C A G C T C T G A C A G T T A C G A T G C T C A G T C A G

SCRT2/MA0744.1/Jaspar

Match Rank:3
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-GCCCWRTTGCTWA
CCACCTGTTGCAT-
 A C G T A C T G A G T C A G T C A G T C C G A T T C A G A C G T A C G T A C T G A G T C A C G T C G T A C G T A
T A G C G T A C C G T A A T G C A G T C A C G T C A T G A C G T A C G T A C T G T G A C C G T A A G C T A C G T

PB0191.1_Tcfap2c_2/Jaspar

Match Rank:4
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--GCCCWRTTGCTWA
CCGCCCAAGGGCAG-
 A C G T A C G T A C T G A G T C A G T C A G T C C G A T T C A G A C G T A C G T A C T G A G T C A C G T C G T A C G T A
A T G C G A T C T C A G G T A C G A T C G A T C C G T A G C T A C T A G C T A G C A T G A G T C C G T A C T A G A C G T

NRL/MA0842.1/Jaspar

Match Rank:5
Score:0.57
Offset:3
Orientation:forward strand
Alignment:GCCCWRTTGCTWA-
---AATTTGCTGAC
 A C T G A G T C A G T C A G T C C G A T T C A G A C G T A C G T A C T G A G T C A C G T C G T A C G T A A C G T
A C G T A C G T A C G T C G T A C G T A G C A T G C A T G A C T T C A G G T A C G C A T C A T G G C T A A G T C

SCRT1/MA0743.1/Jaspar

Match Rank:6
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---GCCCWRTTGCTWA
ANCCACCTGTTGCNC-
 A C G T A C G T A C G T A C T G A G T C A G T C A G T C C G A T T C A G A C G T A C G T A C T G A G T C A C G T C G T A C G T A
C T G A T C G A T G A C G T A C T C G A G T A C G A T C A C G T A C T G A C G T C A G T C T A G T G A C C G A T A G T C A C G T

PB0054.1_Rfx3_1/Jaspar

Match Rank:7
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--GCCCWRTTGCTWA--------
NTNNNNNGTTGCTANGGNNCANA
 A C G T A C G T A C T G A G T C A G T C A G T C C G A T T C A G A C G T A C G T A C T G A G T C A C G T C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C G A T C G A T C G T A C G T A G C A T A G T C A T C G C T A G A C G T G A C T C T A G A G T C A G C T C T G A C T G A T A C G A C T G C T A G C A G T T A G C T C G A G T A C C T G A

YY1/MA0095.2/Jaspar

Match Rank:8
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---GCCCWRTTGCTWA
GCNGCCATCTTG----
 A C G T A C G T A C G T A C T G A G T C A G T C A G T C C G A T T C A G A C G T A C G T A C T G A G T C A C G T C G T A C G T A
C A T G A G T C T G A C C A T G A G T C A G T C C T G A A C G T A G T C A G C T G A C T A C T G A C G T A C G T A C G T A C G T

PB0055.1_Rfx4_1/Jaspar

Match Rank:9
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:GCCCWRTTGCTWA----
--NNCGTTGCTATGGNN
 A C T G A G T C A G T C A G T C C G A T T C A G A C G T A C G T A C T G A G T C A C G T C G T A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T G C T A A G T C A T G C C T A G A G C T G A C T C T A G A G T C A G C T C T G A C A G T T A C G A T C G C A G T T C G A

PB0189.1_Tcfap2a_2/Jaspar

Match Rank:10
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--GCCCWRTTGCTWA
NTGCCCANNGGTNA-
 A C G T A C G T A C T G A G T C A G T C A G T C C G A T T C A G A C G T A C G T A C T G A G T C A C G T C G T A C G T A
T G A C G C A T T C A G G T A C G A T C A G T C C G T A T A C G T C G A C T A G T C A G G A C T C A T G C T G A A C G T