Information for 14-CCTGGKTACCAAAAKA (Motif 18)

A T G C A G T C C A G T A T C G A T C G C A T G C A G T G C T A G T A C G T A C C G T A G T C A C T G A C T G A A C G T C T G A
Reverse Opposite:
A G C T T G C A A G C T A G C T A C G T A C G T A C T G A C T G C A G T G C T A G T A C A T G C A T G C G C T A C T A G A T C G
p-value:1e-9
log p-value:-2.275e+01
Information Content per bp:1.716
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.17%
Number of Background Sequences with motif22.9
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets52.7 +/- 26.4bp
Average Position of motif in Background44.6 +/- 27.6bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0158.1_Rfx3_2/Jaspar

Match Rank:1
Score:0.61
Offset:-7
Orientation:forward strand
Alignment:-------CCTGGKTACCAAAAKA
ACTGACCCTTGGTTACCACAAAG
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C C A G T A T C G A T C G C A T G C A G T G C T A G T A C G T A C C G T A G T C A C T G A C T G A A C G T C T G A
T G C A A G T C A C G T A T C G G C T A A T G C T A C G A T G C G C A T C G A T T C A G A C T G C G A T C A G T C G T A G A T C T G A C T C G A T G A C T C G A T C G A C G T A A T C G

PB0159.1_Rfx4_2/Jaspar

Match Rank:2
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---CCTGGKTACCAAAAKA
TACCCTAGTTACCGA----
A C G T A C G T A C G T A T G C A G T C C A G T A T C G A T C G C A T G C A G T G C T A G T A C G T A C C G T A G T C A C T G A C T G A A C G T C T G A
G C A T G T C A A T G C A T G C G T A C C A G T T C G A A C T G C G A T A C G T C G T A A G T C T A G C T A C G G T C A A C G T A C G T A C G T A C G T

SA0002.1_at_AC_acceptor/Jaspar

Match Rank:3
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--CCTGGKTACCAAAAKA--
NNCCTGNAAAAAAAAAAAAA
A C G T A C G T A T G C A G T C C A G T A T C G A T C G C A T G C A G T G C T A G T A C G T A C C G T A G T C A C T G A C T G A A C G T C T G A A C G T A C G T
G C T A C G T A A G T C A G T C A C G T C T A G C T G A C T G A C T G A C T G A C T G A T C G A T C G A T C G A T C G A C T G A C T G A C T G A T C G A C T G A

SA0001.1_at_AC_acceptor/Jaspar

Match Rank:4
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--CCTGGKTACCAAAAKA--
NNCCTGNAAAAAAAAAAAAA
A C G T A C G T A T G C A G T C C A G T A T C G A T C G C A T G C A G T G C T A G T A C G T A C C G T A G T C A C T G A C T G A A C G T C T G A A C G T A C G T
G C T A G C T A A G T C A G T C A C G T C T A G C T G A C T G A C T G A C T G A C T G A T C G A T C G A T C G A T C G A T C G A T C G A T C G A C T G A C T G A

MEF2C/MA0497.1/Jaspar

Match Rank:5
Score:0.57
Offset:4
Orientation:forward strand
Alignment:CCTGGKTACCAAAAKA---
----ATGCTAAAAATAGAA
A T G C A G T C C A G T A T C G A T C G C A T G C A G T G C T A G T A C G T A C C G T A G T C A C T G A C T G A A C G T C T G A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C T G A C G A T C A T G G T A C A G C T G C T A C T G A C T G A C G T A C G T A G A C T C T G A T C A G G T C A G C T A

PB0160.1_Rfxdc2_2/Jaspar

Match Rank:6
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---CCTGGKTACCAAAAKA
CTACTTGGATACGGAAT--
A C G T A C G T A C G T A T G C A G T C C A G T A T C G A T C G C A T G C A G T G C T A G T A C G T A C C G T A G T C A C T G A C T G A A C G T C T G A
A T G C A C G T T C G A A T G C C A G T G A C T T C A G A C T G C G T A A C G T C G T A G A T C T A C G T A C G C G T A C G T A G C A T A C G T A C G T

Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer

Match Rank:7
Score:0.54
Offset:6
Orientation:forward strand
Alignment:CCTGGKTACCAAAAKA--
------DCYAAAAATAGM
A T G C A G T C C A G T A T C G A T C G C A T G C A G T G C T A G T A C G T A C C G T A G T C A C T G A C T G A A C G T C T G A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C A T G G T A C G A C T G C T A C G T A C G T A C G T A G C T A G A C T C T G A T C A G G T A C

PB0121.1_Foxj3_2/Jaspar

Match Rank:8
Score:0.53
Offset:4
Orientation:forward strand
Alignment:CCTGGKTACCAAAAKA-----
----AACACCAAAACAAAGGA
A T G C A G T C C A G T A T C G A T C G C A T G C A G T G C T A G T A C G T A C C G T A G T C A C T G A C T G A A C G T C T G A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G T C A C G T A A G T C C T G A G A T C G A T C T G C A G C T A G T C A C G T A A G T C C G T A C G T A G C T A C A T G T A C G C G T A

Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer

Match Rank:9
Score:0.52
Offset:6
Orientation:reverse strand
Alignment:CCTGGKTACCAAAAKA--
------KCCAAAAATAGC
A T G C A G T C C A G T A T C G A T C G C A T G C A G T G C T A G T A C G T A C C G T A G T C A C T G A C T G A A C G T C T G A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C T G G T A C G A T C G C T A C G T A C T G A C G T A C G T A G C A T C T G A T C A G G T A C

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-CCTGGKTACCAAAAKA
SCCTAGCAACAG-----
A C G T A T G C A G T C C A G T A T C G A T C G C A T G C A G T G C T A G T A C G T A C C G T A G T C A C T G A C T G A A C G T C T G A
A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G A C G T A C G T A C G T A C G T A C G T