Information for 2-AAAGGCCAAA (Motif 2)

C T G A T G C A T C G A C A T G T C A G T A G C G T A C C G T A T G C A C T G A
Reverse Opposite:
A G C T A C G T A C G T A C T G A T C G A G T C G T A C A G C T A C G T A G C T
p-value:1e-38
log p-value:-8.814e+01
Information Content per bp:1.731
Number of Target Sequences with motif33.0
Percentage of Target Sequences with motif4.20%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.20%
Average Position of motif in Targets51.4 +/- 27.0bp
Average Position of motif in Background54.0 +/- 7.1bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer

Match Rank:1
Score:0.72
Offset:-4
Orientation:reverse strand
Alignment:----AAAGGCCAAA
ANGNAAAGGTCA--
 A C G T A C G T A C G T A C G T C T G A T G C A T C G A C A T G T C A G T A G C G T A C C G T A T G C A C T G A
C T G A A C T G C A T G C A G T C G T A C G T A C G T A A C T G A C T G A C G T A G T C C G T A A C G T A C G T

PB0049.1_Nr2f2_1/Jaspar

Match Rank:2
Score:0.72
Offset:-4
Orientation:forward strand
Alignment:----AAAGGCCAAA--
TCTCAAAGGTCACGAG
 A C G T A C G T A C G T A C G T C T G A T G C A T C G A C A T G T C A G T A G C G T A C C G T A T G C A C T G A A C G T A C G T
C A G T G T A C A C G T G T A C C G T A C T G A C T G A A C T G A C T G A C G T A G T C C T G A G T A C T A C G C G T A A C T G

PB0053.1_Rara_1/Jaspar

Match Rank:3
Score:0.70
Offset:-4
Orientation:forward strand
Alignment:----AAAGGCCAAA--
TCTCAAAGGTCACCTG
 A C G T A C G T A C G T A C G T C T G A T G C A T C G A C A T G T C A G T A G C G T A C C G T A T G C A C T G A A C G T A C G T
C A G T G T A C A G C T G T A C G C T A C T G A T C G A A C T G A C T G A C G T A G T C C T G A G A T C T A G C G A C T C A T G

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:4
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-AAAGGCCAAA
CAAAGGTCAG-
 A C G T C T G A T G C A T C G A C A T G T C A G T A G C G T A C C G T A T G C A C T G A
A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G A C G T

NR4A2/MA0160.1/Jaspar

Match Rank:5
Score:0.69
Offset:1
Orientation:forward strand
Alignment:AAAGGCCAAA
-AAGGTCAC-
 C T G A T G C A T C G A C A T G T C A G T A G C G T A C C G T A T G C A C T G A
A C G T C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C A C G T

PB0134.1_Hnf4a_2/Jaspar

Match Rank:6
Score:0.69
Offset:-4
Orientation:forward strand
Alignment:----AAAGGCCAAA--
GGCAAAAGTCCAATAA
 A C G T A C G T A C G T A C G T C T G A T G C A T C G A C A T G T C A G T A G C G T A C C G T A T G C A C T G A A C G T A C G T
A C G T A C G T G A T C G T A C C G T A C T G A C T G A A C T G A C G T G T A C A G T C C T G A G T C A C G A T G T C A G C A T

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:7
Score:0.67
Offset:0
Orientation:forward strand
Alignment:AAAGGCCAAA
CAAGGHCANV
 C T G A T G C A T C G A C A T G T C A G T A G C G T A C C G T A T G C A C T G A
T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G

HNF4G/MA0484.1/Jaspar

Match Rank:8
Score:0.66
Offset:-7
Orientation:forward strand
Alignment:-------AAAGGCCAAA
AGAGTCCAAAGTCCA--
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A T G C A T C G A C A T G T C A G T A G C G T A C C G T A T G C A C T G A
C G T A T C A G C T G A C T A G C A G T A G T C A G T C T G C A T C G A C T G A C A T G C A G T A G T C G A T C G C T A A C G T A C G T

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:9
Score:0.66
Offset:-6
Orientation:forward strand
Alignment:------AAAGGCCAAA
TAGGGCAAAGGTCA--
 A C G T A C G T A C G T A C G T A C G T A C G T C T G A T G C A T C G A C A T G T C A G T A G C G T A C C G T A T G C A C T G A
A G C T C T G A C T A G C T A G A C T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C T C G A A C G T A C G T

NR2F1/MA0017.2/Jaspar

Match Rank:10
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-AAAGGCCAAA--
CAAAGGTCAAGGG
 A C G T C T G A T G C A T C G A C A T G T C A G T A G C G T A C C G T A T G C A C T G A A C G T A C G T
G T A C G C T A C T G A C T G A A T C G A C T G A C G T A G T C C T G A G T C A T C A G T C A G C T A G