Information for 3-GYCGCCATKKGWARWR (Motif 8)

A C T G A G T C G T A C A C T G A G T C A G T C C T G A A C G T A C G T A C T G A C T G G C T A G T C A C T G A C G T A T C A G
Reverse Opposite:
A G T C C G A T A G C T A C G T C G A T G T A C G T A C T G A C G T C A A G C T A C T G A C T G A G T C A C T G C T A G A G T C
p-value:1e-13
log p-value:-3.156e+01
Information Content per bp:1.761
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif1.53%
Number of Background Sequences with motif6.2
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets49.3 +/- 22.7bp
Average Position of motif in Background44.1 +/- 28.1bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

YY2/MA0748.1/Jaspar

Match Rank:1
Score:0.73
Offset:-1
Orientation:forward strand
Alignment:-GYCGCCATKKGWARWR
GTCCGCCATTA------
 A C G T A C T G A G T C G T A C A C T G A G T C A G T C C T G A A C G T A C G T A C T G A C T G G C T A G T C A C T G A C G T A T C A G
C T A G C G A T G A T C A T G C T A C G T G A C A G T C C G T A C G A T G A C T C G T A A C G T A C G T A C G T A C G T A C G T A C G T

YY1(Zf)/Promoter/Homer

Match Rank:2
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:GYCGCCATKKGWARWR
GCCGCCATCTTG----
 A C T G A G T C G T A C A C T G A G T C A G T C C T G A A C G T A C G T A C T G A C T G G C T A G T C A C T G A C G T A T C A G
C A T G G A T C A T G C C T A G A G T C A G T C C G T A A C G T A T G C A G C T A C G T A T C G A C G T A C G T A C G T A C G T

YY1/MA0095.2/Jaspar

Match Rank:3
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:GYCGCCATKKGWARWR
GCNGCCATCTTG----
 A C T G A G T C G T A C A C T G A G T C A G T C C T G A A C G T A C G T A C T G A C T G G C T A G T C A C T G A C G T A T C A G
C A T G A G T C T G A C C A T G A G T C A G T C C T G A A C G T A G T C A G C T G A C T A C T G A C G T A C G T A C G T A C G T

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:4
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-GYCGCCATKKGWARWR
NGTTGCCATGGCAA---
 A C G T A C T G A G T C G T A C A C T G A G T C A G T C C T G A A C G T A C G T A C T G A C T G G C T A G T C A C T G A C G T A T C A G
A C T G T C A G A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A C G T A C G T A C G T

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:5
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-GYCGCCATKKGWARWR
GGTTGCCATGGCAA---
 A C G T A C T G A G T C G T A C A C T G A G T C A G T C C T G A A C G T A C G T A C T G A C T G G C T A G T C A C T G A C G T A T C A G
C A T G C T A G A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A C G T A C G T A C G T

PB0112.1_E2F2_2/Jaspar

Match Rank:6
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----GYCGCCATKKGWARWR
CCTTCGGCGCCAAAAGG----
 A C G T A C G T A C G T A C G T A C G T A C T G A G T C G T A C A C T G A G T C A G T C C T G A A C G T A C G T A C T G A C T G G C T A G T C A C T G A C G T A T C A G
G A T C T A C G A G C T C G A T G A T C C T A G A T C G T G A C C A T G T A G C G A T C C T G A G T C A C T G A T C G A A C T G A T C G A C G T A C G T A C G T A C G T

Rfx1/MA0509.1/Jaspar

Match Rank:7
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:GYCGCCATKKGWARWR
GTTGCCATGGNAAC--
 A C T G A G T C G T A C A C T G A G T C A G T C C T G A A C G T A C G T A C T G A C T G G C T A G T C A C T G A C G T A T C A G
A C T G A G C T G A C T C A T G A G T C A G T C C G T A C G A T C T A G T C A G T G A C C T G A T G C A G A T C A C G T A C G T

RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer

Match Rank:8
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:GYCGCCATKKGWARWR
GTTGCCATGGCAACCG
 A C T G A G T C G T A C A C T G A G T C A G T C C T G A A C G T A C G T A C T G A C T G G C T A G T C A C T G A C G T A T C A G
C T A G A G C T G A C T C T A G A G T C A G T C G T C A C G A T T C A G T C A G G A T C C T G A T C G A G A T C T A G C T C A G

Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer

Match Rank:9
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-GYCGCCATKKGWARWR
KGTTGCCATGGCAAC--
 A C G T A C T G A G T C G T A C A C T G A G T C A G T C C T G A A C G T A C G T A C T G A C T G G C T A G T C A C T G A C G T A T C A G
A C T G C T A G A G C T G A C T C A T G A G T C A G T C G T C A C A G T C T A G T C A G G T A C C T G A T C G A G A T C A C G T A C G T

PB0113.1_E2F3_2/Jaspar

Match Rank:10
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----GYCGCCATKKGWARWR
AGCTCGGCGCCAAAAGC----
 A C G T A C G T A C G T A C G T A C G T A C T G A G T C G T A C A C T G A G T C A G T C C T G A A C G T A C G T A C T G A C T G G C T A G T C A C T G A C G T A T C A G
G T A C A T C G G A C T C G A T G A T C C T A G A T C G G T A C C A T G T A G C G A T C C G T A G T C A C T G A T G C A A T C G A T G C A C G T A C G T A C G T A C G T