Information for 2-AATTATTAGGTTG (Motif 5)

C G T A C G T A A C G T C G A T C T G A A C G T C G A T C G T A A C T G A C T G A G C T C G A T A C T G
Reverse Opposite:
A G T C C G T A C T G A A G T C A G T C A C G T C G T A C G T A A G C T C G T A C G T A A C G T C G A T
p-value:1e-11
log p-value:-2.642e+01
Information Content per bp:1.859
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.78%
Number of Background Sequences with motif1.2
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets38.6 +/- 22.1bp
Average Position of motif in Background78.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0152.1_Pou6f1_2/Jaspar

Match Rank:1
Score:0.71
Offset:-3
Orientation:forward strand
Alignment:---AATTATTAGGTTG-
AAACATAATGAGGTTGC
 A C G T A C G T A C G T C G T A C G T A A C G T C G A T C T G A A C G T C G A T C G T A A C T G A C T G A G C T C G A T A C T G A C G T
T C G A G T C A G C T A T A G C G C T A C G A T C G T A C G T A A C G T C A T G C G T A A C T G T A C G G C A T C A G T A C T G G T A C

PH0151.1_Pou6f1_1/Jaspar

Match Rank:2
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---AATTATTAGGTTG-
GACGATAATGAGCTTGC
 A C G T A C G T A C G T C G T A C G T A A C G T C G A T C T G A A C G T C G A T C G T A A C T G A C T G A G C T C G A T A C T G A C G T
T A C G G C T A T G A C T A C G G C T A C G A T C G T A C G T A A C G T C A T G C G T A A C T G A T C G G C A T C A G T C T A G G T A C

PB0165.1_Sox11_2/Jaspar

Match Rank:3
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--AATTATTAGGTTG
AAAATTGTTATGAA-
 A C G T A C G T C G T A C G T A A C G T C G A T C T G A A C G T C G A T C G T A A C T G A C T G A G C T C G A T A C T G
C G T A C T G A C T G A C T G A A C G T G A C T T C A G C G A T G A C T G C T A C A G T T C A G C T G A C G T A A C G T

PH0143.1_Pou2f1/Jaspar

Match Rank:4
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----AATTATTAGGTTG
ATATATTAATTAAGTA-
 A C G T A C G T A C G T A C G T C G T A C G T A A C G T C G A T C T G A A C G T C G A T C G T A A C T G A C T G A G C T C G A T A C T G
C T G A G A C T C T A G G C A T C T G A G C A T G C A T G T C A C G T A C G A T A C G T G C T A C T G A A C T G G C A T C G T A A C G T

POU6F2/MA0793.1/Jaspar

Match Rank:5
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:AATTATTAGGTTG
-NTAATGAGCT--
 C G T A C G T A A C G T C G A T C T G A A C G T C G A T C G T A A C T G A C T G A G C T C G A T A C T G
A C G T C G T A C G A T T G C A C T G A C A G T C A T G G T C A C T A G A T G C G A C T A C G T A C G T

MF0010.1_Homeobox_class/Jaspar

Match Rank:6
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:AATTATTAGGTTG
AATTATT------
 C G T A C G T A A C G T C G A T C T G A A C G T C G A T C G T A A C T G A C T G A G C T C G A T A C T G
G C T A G C T A G A C T G A C T C G T A G C A T C G A T A C G T A C G T A C G T A C G T A C G T A C G T

PB0175.1_Sox4_2/Jaspar

Match Rank:7
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----AATTATTAGGTTG
GGAAAAATTGTTAGGAA-
 A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C G T C G A T C T G A A C G T C G A T C G T A A C T G A C T G A G C T C G A T A C T G
T A C G T C A G G C T A C G T A C T G A C T G A C T G A A G C T C G A T T C A G C G A T G A C T C T G A T A C G C T A G C T G A C T G A A C G T

PB0079.1_Sry_1/Jaspar

Match Rank:8
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---AATTATTAGGTTG
TATAATTATAATATTC
 A C G T A C G T A C G T C G T A C G T A A C G T C G A T C T G A A C G T C G A T C G T A A C T G A C T G A G C T C G A T A C T G
A C G T G C T A C A G T G C T A C G T A C G A T C G A T C T G A G A C T C G T A C G T A C G A T C T G A C G A T C A G T T G A C

Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer

Match Rank:9
Score:0.59
Offset:2
Orientation:forward strand
Alignment:AATTATTAGGTTG
--TAATTAGN---
 C G T A C G T A A C G T C G A T C T G A A C G T C G A T C G T A A C T G A C T G A G C T C G A T A C T G
A C G T A C G T A G C T G T C A C G T A A C G T A C G T C T G A T C A G A T G C A C G T A C G T A C G T

VSX2/MA0726.1/Jaspar

Match Rank:10
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:AATTATTAGGTTG
-NTAATTAG----
 C G T A C G T A A C G T C G A T C T G A A C G T C G A T C G T A A C T G A C T G A G C T C G A T A C T G
A C G T T G A C G A C T C G T A C T G A A C G T C G A T C T G A T C A G A C G T A C G T A C G T A C G T