Information for 2-TTDCYTGGCTSCATCT (Motif 4)

A G C T C G A T C A T G G T A C G A T C A C G T A C T G A C T G A G T C A C G T A T G C G T A C G C T A A G C T G T A C A C G T
Reverse Opposite:
C G T A C A T G C T G A C G A T A C T G A T C G C G T A C T A G G T A C A G T C C G T A C T A G A C T G G T A C C G T A C T G A
p-value:1e-11
log p-value:-2.692e+01
Information Content per bp:1.742
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.24%
Number of Background Sequences with motif10.4
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets53.0 +/- 25.2bp
Average Position of motif in Background51.2 +/- 26.1bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL004.1_CCAAT-box/Jaspar

Match Rank:1
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:TTDCYTGGCTSCATCT
-TGATTGGCTANN---
 A G C T C G A T C A T G G T A C G A T C A C G T A C T G A C T G A G T C A C G T A T G C G T A C G C T A A G C T G T A C A C G T
A C G T A G C T A T C G G C T A G C A T A C G T C T A G T A C G G A T C G A C T C T G A T C A G C A G T A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:2
Score:0.57
Offset:4
Orientation:forward strand
Alignment:TTDCYTGGCTSCATCT
----TTGGCA------
 A G C T C G A T C A T G G T A C G A T C A C G T A C T G A C T G A G T C A C G T A T G C G T A C G C T A A G C T G T A C A C G T
A C G T A C G T A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T A C G T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:3
Score:0.56
Offset:4
Orientation:forward strand
Alignment:TTDCYTGGCTSCATCT
----TWGTCTGV----
 A G C T C G A T C A T G G T A C G A T C A C G T A C T G A C T G A G T C A C G T A T G C G T A C G C T A A G C T G T A C A C G T
A C G T A C G T A C G T A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:4
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:TTDCYTGGCTSCATCT
---NTTGGCANN----
 A G C T C G A T C A T G G T A C G A T C A C G T A C T G A C T G A G T C A C G T A T G C G T A C G C T A A G C T G T A C A C G T
A C G T A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T A C G T A C G T A C G T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:5
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---TTDCYTGGCTSCATCT
GTCATGCHTGRCTGS----
 A C G T A C G T A C G T A G C T C G A T C A T G G T A C G A T C A C G T A C T G A C T G A G T C A C G T A T G C G T A C G C T A A G C T G T A C A C G T
A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C A C G T A C G T A C G T A C G T

PB0159.1_Rfx4_2/Jaspar

Match Rank:6
Score:0.54
Offset:0
Orientation:forward strand
Alignment:TTDCYTGGCTSCATCT
TACCCTAGTTACCGA-
 A G C T C G A T C A T G G T A C G A T C A C G T A C T G A C T G A G T C A C G T A T G C G T A C G C T A A G C T G T A C A C G T
G C A T G T C A A T G C A T G C G T A C C A G T T C G A A C T G C G A T A C G T C G T A A G T C T A G C T A C G G T C A A C G T

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:7
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:TTDCYTGGCTSCATCT
NNACTTGCCTT-----
 A G C T C G A T C A T G G T A C G A T C A C G T A C T G A C T G A G T C A C G T A T G C G T A C G C T A A G C T G T A C A C G T
T C G A G A T C T G C A A G T C G A C T A G C T A C T G A G T C G A T C G C A T A C G T A C G T A C G T A C G T A C G T A C G T

NFYB/MA0502.1/Jaspar

Match Rank:8
Score:0.51
Offset:0
Orientation:reverse strand
Alignment:TTDCYTGGCTSCATCT
CTGATTGGTCNATTT-
 A G C T C G A T C A T G G T A C G A T C A C G T A C T G A C T G A G T C A C G T A T G C G T A C G C T A A G C T G T A C A C G T
A T G C A G C T A T C G C G T A A G C T A C G T A C T G A C T G G A C T A G T C T A G C T C G A C A G T C A G T A G C T A C G T

Foxo1/MA0480.1/Jaspar

Match Rank:9
Score:0.51
Offset:2
Orientation:forward strand
Alignment:TTDCYTGGCTSCATCT
--TCCTGTTTACA---
 A G C T C G A T C A T G G T A C G A T C A C G T A C T G A C T G A G T C A C G T A T G C G T A C G C T A A G C T G T A C A C G T
A C G T A C G T C A G T A T G C A G T C A C G T A C T G A C G T A C G T A C G T G C T A A G T C G C T A A C G T A C G T A C G T

PAX5/MA0014.2/Jaspar

Match Rank:10
Score:0.50
Offset:-3
Orientation:reverse strand
Alignment:---TTDCYTGGCTSCATCT
GTCACGCTTGGCTGCNCNN
 A C G T A C G T A C G T A G C T C G A T C A T G G T A C G A T C A C G T A C T G A C T G A G T C A C G T A T G C G T A C G C T A A G C T G T A C A C G T
C A T G G A C T A G T C G T C A G A T C T C A G T A G C G A C T A G C T A T C G T C A G A T G C G A C T C T A G T G A C G A T C A G T C G C A T A G T C