Information for 6-AGTGACCCTA (Motif 23)

C T G A C T A G A G C T C T A G G T C A A T G C G T A C G T A C A G C T G T C A
Reverse Opposite:
C A G T C T G A C A T G A C T G A T C G A C G T A G T C C T G A A G T C G A C T
p-value:1e-5
log p-value:-1.254e+01
Information Content per bp:1.738
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif2.33%
Number of Background Sequences with motif262.6
Percentage of Background Sequences with motif0.54%
Average Position of motif in Targets43.9 +/- 24.3bp
Average Position of motif in Background53.1 +/- 23.8bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:1
Score:0.70
Offset:2
Orientation:reverse strand
Alignment:AGTGACCCTA
--TGACCT--
 C T G A C T A G A G C T C T A G G T C A A T G C G T A C G T A C A G C T G T C A
A C G T A C G T A C G T C A T G G C T A G T A C G T A C G A C T A C G T A C G T

NR4A2/MA0160.1/Jaspar

Match Rank:2
Score:0.70
Offset:1
Orientation:reverse strand
Alignment:AGTGACCCTA
-GTGACCTT-
 C T G A C T A G A G C T C T A G G T C A A T G C G T A C G T A C A G C T G T C A
A C G T A C T G A C G T C T A G C G T A A G T C G T A C A G C T A G C T A C G T

PB0057.1_Rxra_1/Jaspar

Match Rank:3
Score:0.69
Offset:-3
Orientation:forward strand
Alignment:---AGTGACCCTA----
TGTCGTGACCCCTTAAT
 A C G T A C G T A C G T C T G A C T A G A G C T C T A G G T C A A T G C G T A C G T A C A G C T G T C A A C G T A C G T A C G T A C G T
C A G T A T C G G A C T A G T C C A T G A G C T T C A G G T C A G T A C G T A C A G T C A G T C C G A T G A C T T C G A G T C A A G C T

PB0153.1_Nr2f2_2/Jaspar

Match Rank:4
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--AGTGACCCTA----
NNNNTGACCCGGCGCG
 A C G T A C G T C T G A C T A G A G C T C T A G G T C A A T G C G T A C G T A C A G C T G T C A A C G T A C G T A C G T A C G T
C G A T T C G A T A G C A T C G A G C T T C A G G T C A G T A C G T A C A G T C T A C G T C A G G T A C A C T G G T A C A C T G

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:5
Score:0.69
Offset:2
Orientation:reverse strand
Alignment:AGTGACCCTA
--TGACCYCT
 C T G A C T A G A G C T C T A G G T C A A T G C G T A C G T A C A G C T G T C A
A C G T A C G T A G C T T C A G T G C A G T A C T G A C A G C T A G T C A G C T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:6
Score:0.68
Offset:2
Orientation:reverse strand
Alignment:AGTGACCCTA
--TGACCTYA
 C T G A C T A G A G C T C T A G G T C A A T G C G T A C G T A C A G C T G T C A
A C G T A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A

PB0157.1_Rara_2/Jaspar

Match Rank:7
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--AGTGACCCTA----
NNCNTGACCCCGCTCT
 A C G T A C G T C T G A C T A G A G C T C T A G G T C A A T G C G T A C G T A C A G C T G T C A A C G T A C G T A C G T A C G T
A C G T T G C A T G A C C A G T G A C T T C A G C G T A G T A C G T A C A T G C T A G C T C A G G T A C C A G T G T A C C A G T

PB0053.1_Rara_1/Jaspar

Match Rank:8
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--AGTGACCCTA----
NNNGTGACCTTTGNNN
 A C G T A C G T C T G A C T A G A G C T C T A G G T C A A T G C G T A C G T A C A G C T G T C A A C G T A C G T A C G T A C G T
G T A C C G T A A T C G C T A G A G C T T C A G G T C A G T A C G T A C A G C T A G C T C G A T C A T G T C G A C A T G G T C A

PB0049.1_Nr2f2_1/Jaspar

Match Rank:9
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--AGTGACCCTA----
NNNNTGACCTTTNNNN
 A C G T A C G T C T G A C T A G A G C T C T A G G T C A A T G C G T A C G T A C A G C T G T C A A C G T A C G T A C G T A C G T
A G T C C G A T A T G C C A T G A G C T T C A G G T C A G T A C G T A C A G C T A G C T G C A T C A T G T C G A C A T G G T C A

NR2F1/MA0017.2/Jaspar

Match Rank:10
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--AGTGACCCTA-
CNNTTGACCTTTG
 A C G T A C G T C T G A C T A G A G C T C T A G G T C A A T G C G T A C G T A C A G C T G T C A A C G T
G A T C A G T C A G T C C A G T A G C T A C T G C G T A A G T C A T G C A G C T G A C T C G A T C A T G