Information for 1-AGVCGGTTBAACACAA (Motif 2)

C G T A A C T G T C G A A T G C A T C G A C T G A C G T A C G T A C G T C G T A C T G A G T A C G C T A A T G C C G T A C G T A
Reverse Opposite:
A C G T A C G T A T C G C G A T A C T G A G C T C G A T T C G A G T C A C G T A G T A C T A G C A T C G A C G T A G T C A C G T
p-value:1e-12
log p-value:-2.915e+01
Information Content per bp:1.755
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif1.09%
Number of Background Sequences with motif4.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets49.1 +/- 29.9bp
Average Position of motif in Background37.5 +/- 16.6bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0062.1_Sox12_1/Jaspar

Match Rank:1
Score:0.52
Offset:5
Orientation:reverse strand
Alignment:AGVCGGTTBAACACAA---
-----NTTNAGAACAATTA
 C G T A A C T G T C G A A T G C A T C G A C T G A C G T A C G T A C G T C G T A C T G A G T A C G C T A A T G C C G T A C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C A T G C G A T C G A T C A G T C G T A A C T G C T G A G C T A A G T C G C T A C G T A G C A T C G A T C T G A

SRY/MA0084.1/Jaspar

Match Rank:2
Score:0.52
Offset:8
Orientation:forward strand
Alignment:AGVCGGTTBAACACAA-
--------GTAAACAAT
 C G T A A C T G T C G A A T G C A T C G A C T G A C G T A C G T A C G T C G T A C T G A G T A C G C T A A T G C C G T A C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G C G A T C G T A C G T A C G T A A G T C C G T A C T G A C G A T

PB0067.1_Sox18_1/Jaspar

Match Rank:3
Score:0.51
Offset:5
Orientation:reverse strand
Alignment:AGVCGGTTBAACACAA-----
-----NNTNANAACAATTNNA
 C G T A A C T G T C G A A T G C A T C G A C T G A C G T A C G T A C G T C G T A C T G A G T A C G C T A A T G C C G T A C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G A T C A G T G C A T C A G T C G T A T C A G C G T A G C T A A G T C G C T A C G T A C G A T C A G T T C A G C G T A T C G A

PB0168.1_Sox14_2/Jaspar

Match Rank:4
Score:0.50
Offset:7
Orientation:forward strand
Alignment:AGVCGGTTBAACACAA------
-------CTCACACAATGGCGC
 C G T A A C T G T C G A A T G C A T C G A C T G A C G T A C G T A C G T C G T A C T G A G T A C G C T A A T G C C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C G T A G T C T C G A T A G C C G T A A T G C G T C A G T C A G C A T C T A G T C A G G T A C A C T G A T G C

MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer

Match Rank:5
Score:0.50
Offset:1
Orientation:forward strand
Alignment:AGVCGGTTBAACACAA
-GGCVGTTR-------
 C G T A A C T G T C G A A T G C A T C G A C T G A C G T A C G T A C G T C G T A C T G A G T A C G C T A A T G C C G T A C G T A
A C G T C T A G C T A G A G T C T C A G A C T G A C G T A C G T C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:6
Score:0.49
Offset:9
Orientation:reverse strand
Alignment:AGVCGGTTBAACACAA---
---------RNAACAATGG
 C G T A A C T G T C G A A T G C A T C G A C T G A C G T A C G T A C G T C G T A C T G A G T A C G C T A A T G C C G T A C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A T C A G T C G A T C G A A T G C C G T A T C G A G C A T C A T G T A C G

TFCP2/MA0145.3/Jaspar

Match Rank:7
Score:0.49
Offset:-1
Orientation:reverse strand
Alignment:-AGVCGGTTBAACACAA
AAACCGGTTT-------
 A C G T C G T A A C T G T C G A A T G C A T C G A C T G A C G T A C G T A C G T C G T A C T G A G T A C G C T A A T G C C G T A C G T A
C T G A C T G A C G T A A T G C G A T C C T A G A T C G G C A T G C A T A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

MF0009.1_TRP(MYB)_class/Jaspar

Match Rank:8
Score:0.49
Offset:0
Orientation:forward strand
Alignment:AGVCGGTTBAACACAA
TGTCGGTT--------
 C G T A A C T G T C G A A T G C A T C G A C T G A C G T A C G T A C G T C G T A C T G A G T A C G C T A A T G C C G T A C G T A
C G A T C A T G C G A T G A T C T C A G A T C G G C A T G C A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Stat6/MA0520.1/Jaspar

Match Rank:9
Score:0.49
Offset:3
Orientation:forward strand
Alignment:AGVCGGTTBAACACAA--
---CATTTCCTGAGAAAT
 C G T A A C T G T C G A A T G C A T C G A C T G A C G T A C G T A C G T C G T A C T G A G T A C G C T A A T G C C G T A C G T A A C G T A C G T
A C G T A C G T A C G T A T G C C G T A A G C T A C G T C G A T G T A C G A T C C G A T T A C G C T G A C A T G C G T A C T G A T G C A G A C T

Rhox11/MA0629.1/Jaspar

Match Rank:10
Score:0.49
Offset:-1
Orientation:forward strand
Alignment:-AGVCGGTTBAACACAA
AAGACGCTGTAAAGCGA
 A C G T C G T A A C T G T C G A A T G C A T C G A C T G A C G T A C G T A C G T C G T A C T G A G T A C G C T A A T G C C G T A C G T A
C G T A T G C A C A T G T G C A G A T C C T A G T A G C C A G T C T A G G A C T C G T A G C T A G C T A C T A G T A G C T C A G G C T A