Information for 3-GATGGATTGRTAG (Motif 8)

A C T G C G T A A C G T C T A G A T C G G T C A G A C T C G A T A C T G C T A G C G A T C G T A C T A G
Reverse Opposite:
A G T C A C G T G C T A G A T C G T A C C G T A C T G A A C G T T A G C A G T C G T C A C G A T A G T C
p-value:1e-10
log p-value:-2.436e+01
Information Content per bp:1.717
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif2.50%
Number of Background Sequences with motif88.7
Percentage of Background Sequences with motif0.18%
Average Position of motif in Targets50.1 +/- 24.9bp
Average Position of motif in Background52.1 +/- 30.7bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.15
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer

Match Rank:1
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-GATGGATTGRTAG-
AGATGKDGAGATAAG
 A C G T A C T G C G T A A C G T C T A G A T C G G T C A G A C T C G A T A C T G C T A G C G A T C G T A C T A G A C G T
C G T A A C T G G T C A A C G T A T C G C A G T C T A G T C A G C G T A A C T G C G T A A C G T C G T A C T G A T A C G

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:2
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--GATGGATTGRTAG
ATGATKGATGRC---
 A C G T A C G T A C T G C G T A A C G T C T A G A T C G G T C A G A C T C G A T A C T G C T A G C G A T C G T A C T A G
C T G A C G A T A T C G C G T A C G A T C A G T C T A G C G T A C G A T A C T G C T G A A T G C A C G T A C G T A C G T

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:3
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-GATGGATTGRTAG
GGTTGCCATGGCAA
 A C G T A C T G C G T A A C G T C T A G A T C G G T C A G A C T C G A T A C T G C T A G C G A T C G T A C T A G
C A T G C T A G A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A

PBX1/MA0070.1/Jaspar

Match Rank:4
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:GATGGATTGRTAG
-TTTGATTGATGN
 A C T G C G T A A C G T C T A G A T C G G T C A G A C T C G A T A C T G C T A G C G A T C G T A C T A G
A C G T C G A T G C A T C A G T A C T G G T C A C G A T A C G T A C T G C G T A A C G T A C T G C A T G

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:5
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-GATGGATTGRTAG
NGTTGCCATGGCAA
 A C G T A C T G C G T A A C G T C T A G A T C G G T C A G A C T C G A T A C T G C T A G C G A T C G T A C T A G
A C T G T C A G A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A

Rfx1/MA0509.1/Jaspar

Match Rank:6
Score:0.51
Offset:0
Orientation:reverse strand
Alignment:GATGGATTGRTAG-
GTTGCCATGGNAAC
 A C T G C G T A A C G T C T A G A T C G G T C A G A C T C G A T A C T G C T A G C G A T C G T A C T A G A C G T
A C T G A G C T G A C T C A T G A G T C A G T C C G T A C G A T C T A G T C A G T G A C C T G A T G C A G A T C

RFX5/MA0510.2/Jaspar

Match Rank:7
Score:0.51
Offset:-1
Orientation:forward strand
Alignment:-GATGGATTGRTAG--
CGTTGCCATGGCAACG
 A C G T A C T G C G T A A C G T C T A G A T C G G T C A G A C T C G A T A C T G C T A G C G A T C G T A C T A G A C G T A C G T
A T G C C T A G A G C T G A C T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C T G A T G C A G A T C T A C G

PB0029.1_Hic1_1/Jaspar

Match Rank:8
Score:0.50
Offset:-5
Orientation:reverse strand
Alignment:-----GATGGATTGRTAG
NGTAGGTTGGCATNNN--
 A C G T A C G T A C G T A C G T A C G T A C T G C G T A A C G T C T A G A T C G G T C A G A C T C G A T A C T G C T A G C G A T C G T A C T A G
C T A G C T A G A G C T C G T A T C A G T C A G A C G T C A G T A C T G A T C G A G T C C G T A G A C T T G C A T C A G G C A T A C G T A C G T

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:9
Score:0.50
Offset:-4
Orientation:reverse strand
Alignment:----GATGGATTGRTAG
AACAGATGGC-------
 A C G T A C G T A C G T A C G T A C T G C G T A A C G T C T A G A T C G G T C A G A C T C G A T A C T G C T A G C G A T C G T A C T A G
C T G A T C G A A G T C G T C A A C T G T G C A G C A T A C T G A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PH0140.1_Pknox1/Jaspar

Match Rank:10
Score:0.50
Offset:3
Orientation:reverse strand
Alignment:GATGGATTGRTAG------
---GGATTGACAGGTCNTT
 A C T G C G T A A C G T C T A G A T C G G T C A G A C T C G A T A C T G C T A G C G A T C G T A C T A G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C T G A C T G C G T A C G A T A C G T C T A G C G T A A G T C C T G A A C T G A T C G G A C T T A G C A C G T G A C T G C A T