Information for 2-GTCGCCCKGGCGA (Motif 3)

A C T G A C G T G A T C C A T G A G T C A G T C G T A C A C G T A C T G A T C G G A T C A C T G C G T A
Reverse Opposite:
A C G T A G T C C A T G A T G C A G T C T G C A A C T G A C T G A C T G G A T C C A T G C G T A A G T C
p-value:1e-11
log p-value:-2.751e+01
Information Content per bp:1.829
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.96%
Number of Background Sequences with motif1.2
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets69.8 +/- 18.9bp
Average Position of motif in Background42.5 +/- 19.7bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:1
Score:0.81
Offset:-1
Orientation:forward strand
Alignment:-GTCGCCCKGGCGA
NGTTGCCATGGCAA
 A C G T A C T G A C G T G A T C C A T G A G T C A G T C G T A C A C G T A C T G A T C G G A T C A C T G C G T A
A C T G T C A G A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A

Rfx1/MA0509.1/Jaspar

Match Rank:2
Score:0.77
Offset:0
Orientation:reverse strand
Alignment:GTCGCCCKGGCGA-
GTTGCCATGGNAAC
 A C T G A C G T G A T C C A T G A G T C A G T C G T A C A C G T A C T G A T C G G A T C A C T G C G T A A C G T
A C T G A G C T G A C T C A T G A G T C A G T C C G T A C G A T C T A G T C A G T G A C C T G A T G C A G A T C

Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer

Match Rank:3
Score:0.76
Offset:0
Orientation:forward strand
Alignment:GTCGCCCKGGCGA--
GTTGCCATGGCAACM
 A C T G A C G T G A T C C A T G A G T C A G T C G T A C A C G T A C T G A T C G G A T C A C T G C G T A A C G T A C G T
C T A G A G C T G A C T C A T G A G T C A G T C G T C A C A G T C T A G T C A G G T A C C T G A T C G A G A T C T G A C

RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer

Match Rank:4
Score:0.75
Offset:-2
Orientation:forward strand
Alignment:--GTCGCCCKGGCGA-
CGGTTGCCATGGCAAC
 A C G T A C G T A C T G A C G T G A T C C A T G A G T C A G T C G T A C A C G T A C T G A T C G G A T C A C T G C G T A A C G T
A G T C A T C G C T A G A G C T G A C T C T A G A G T C A G T C G C T A C A G T T C A G T C A G G A T C C T G A T C G A G A T C

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:5
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-GTCGCCCKGGCGA
GGTTGCCATGGCAA
 A C G T A C T G A C G T G A T C C A T G A G T C A G T C G T A C A C G T A C T G A T C G G A T C A C T G C G T A
C A T G C T A G A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A

RFX4/MA0799.1/Jaspar

Match Rank:6
Score:0.72
Offset:-1
Orientation:reverse strand
Alignment:-GTCGCCCKGGCGA--
CGTTGCCATGGCAACN
 A C G T A C T G A C G T G A T C C A T G A G T C A G T C G T A C A C G T A C T G A T C G G A T C A C T G C G T A A C G T A C G T
A T G C C T A G A G C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A C G T A G A T C T A C G

RFX3/MA0798.1/Jaspar

Match Rank:7
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-GTCGCCCKGGCGA--
CGTTGCCATGGCAACN
 A C G T A C T G A C G T G A T C C A T G A G T C A G T C G T A C A C G T A C T G A T C G G A T C A C T G C G T A A C G T A C G T
A T G C C T A G A G C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A C T G A G A T C T A C G

RFX2/MA0600.2/Jaspar

Match Rank:8
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-GTCGCCCKGGCGA--
CGTTGCCATGGCAACG
 A C G T A C T G A C G T G A T C C A T G A G T C A G T C G T A C A C G T A C T G A T C G G A T C A C T G C G T A A C G T A C G T
A T G C T C A G G A C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A C T G A G A T C T A C G

RFX5/MA0510.2/Jaspar

Match Rank:9
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-GTCGCCCKGGCGA--
CGTTGCCATGGCAACG
 A C G T A C T G A C G T G A T C C A T G A G T C A G T C G T A C A C G T A C T G A T C G G A T C A C T G C G T A A C G T A C G T
A T G C C T A G A G C T G A C T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C T G A T G C A G A T C T A C G

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--GTCGCCCKGGCGA
CTGTTGCTAGGS---
 A C G T A C G T A C T G A C G T G A T C C A T G A G T C A G T C G T A C A C G T A C T G A T C G G A T C A C T G C G T A
A G T C C G A T A C T G A C G T G A C T C T A G A G T C A G C T C T G A C A T G C T A G T A C G A C G T A C G T A C G T