Information for 13-GGACAATGGG (Motif 29)

A C T G A T C G C G T A T G A C G T C A G C T A G C A T T C A G A T C G C T A G
Reverse Opposite:
A G T C T A G C A G T C C G T A C G A T C A G T A C T G G C A T T A G C G T A C
p-value:1e-5
log p-value:-1.218e+01
Information Content per bp:1.672
Number of Target Sequences with motif32.0
Percentage of Target Sequences with motif6.17%
Number of Background Sequences with motif1227.4
Percentage of Background Sequences with motif2.53%
Average Position of motif in Targets46.7 +/- 27.9bp
Average Position of motif in Background51.7 +/- 29.8bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.12
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:1
Score:0.82
Offset:0
Orientation:reverse strand
Alignment:GGACAATGGG
GAACAATGGN
 A C T G A T C G C G T A T G A C G T C A G C T A G C A T T C A G A T C G C T A G
C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G

PB0132.1_Hbp1_2/Jaspar

Match Rank:2
Score:0.82
Offset:-3
Orientation:reverse strand
Alignment:---GGACAATGGG----
NNTNNACAATGGGANNN
 A C G T A C G T A C G T A C T G A T C G C G T A T G A C G T C A G C T A G C A T T C A G A T C G C T A G A C G T A C G T A C G T A C G T
C G T A T A C G A G C T C G T A A G T C G T C A G T A C C G T A C G T A C G A T C T A G C T A G A C T G T C G A G T C A G A T C G C T A

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:3
Score:0.79
Offset:0
Orientation:forward strand
Alignment:GGACAATGGG
RAACAATGGN
 A C T G A T C G C G T A T G A C G T C A G C T A G C A T T C A G A T C G C T A G
C T G A T C G A C G T A A T G C C G T A C G T A C G A T C T A G T C A G G A T C

Sox6/MA0515.1/Jaspar

Match Rank:4
Score:0.78
Offset:-1
Orientation:reverse strand
Alignment:-GGACAATGGG
AAAACAATGG-
 A C G T A C T G A T C G C G T A T G A C G T C A G C T A G C A T T C A G A T C G C T A G
T C G A C T G A T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G A C G T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:5
Score:0.78
Offset:-1
Orientation:reverse strand
Alignment:-GGACAATGGG
VRAACAATGG-
 A C G T A C T G A T C G C G T A T G A C G T C A G C T A G C A T T C A G A T C G C T A G
T G A C C T G A T C G A C G T A T A G C G T C A T C G A G C A T C T A G T A C G A C G T

Sox17/MA0078.1/Jaspar

Match Rank:6
Score:0.77
Offset:1
Orientation:reverse strand
Alignment:GGACAATGGG
-GACAATGNN
 A C T G A T C G C G T A T G A C G T C A G C T A G C A T T C A G A T C G C T A G
A C G T T A C G G T C A A G T C C G T A C T G A C G A T C T A G C G T A C T A G

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:7
Score:0.76
Offset:1
Orientation:reverse strand
Alignment:GGACAATGGG
-RACAAWGG-
 A C T G A T C G C G T A T G A C G T C A G C T A G C A T T C A G A T C G C T A G
A C G T T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G A C G T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:8
Score:0.75
Offset:-1
Orientation:reverse strand
Alignment:-GGACAATGGG
VRRACAAWGG-
 A C G T A C T G A T C G C G T A T G A C G T C A G C T A G C A T T C A G A T C G C T A G
T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G A C G T

SOX9/MA0077.1/Jaspar

Match Rank:9
Score:0.75
Offset:0
Orientation:reverse strand
Alignment:GGACAATGGG
GAACAATGG-
 A C T G A T C G C G T A T G A C G T C A G C T A G C A T T C A G A T C G C T A G
C T A G C G T A G C T A A G T C G C T A G C T A C G A T C T A G T A C G A C G T

Sox2/MA0143.3/Jaspar

Match Rank:10
Score:0.75
Offset:1
Orientation:reverse strand
Alignment:GGACAATGGG
-AACAAAGG-
 A C T G A T C G C G T A T G A C G T C A G C T A G C A T T C A G A T C G C T A G
A C G T T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T