Information for 12-ATAGAATGTMTATTTA (Motif 22)

C G T A A C G T T C G A C A T G C G T A C G T A A C G T A C T G C G A T G T C A A C G T C G T A A C G T A G C T A G C T G T C A
Reverse Opposite:
C A G T C T G A C T G A G T C A C G A T C G T A A C G T C G T A G T A C C G T A C G A T G A C T G A T C A G C T G T C A C G A T
p-value:1e-8
log p-value:-1.922e+01
Information Content per bp:1.713
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif1.35%
Number of Background Sequences with motif21.6
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets46.1 +/- 27.2bp
Average Position of motif in Background58.1 +/- 24.9bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.43
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:1
Score:0.67
Offset:5
Orientation:forward strand
Alignment:ATAGAATGTMTATTTA
-----ATGAATATTC-
 C G T A A C G T T C G A C A T G C G T A C G T A A C G T A C T G C G A T G T C A A C G T C G T A A C G T A G C T A G C T G T C A
A C G T A C G T A C G T A C G T A C G T G C T A A G C T T A C G G T C A C T G A C G A T C T G A G C A T C A G T A G T C A C G T

OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:2
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:ATAGAATGTMTATTTA-
--CTCATGAATATTCAT
 C G T A A C G T T C G A C A T G C G T A C G T A A C G T A C T G C G A T G T C A A C G T C G T A A C G T A G C T A G C T G T C A A C G T
A C G T A C G T T A G C G A C T G A T C C G T A A C G T T C A G G T C A C G T A A C G T C G T A C G A T A C G T A G T C C G T A C G A T

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:3
Score:0.63
Offset:5
Orientation:forward strand
Alignment:ATAGAATGTMTATTTA
-----ATGMATATDC-
 C G T A A C G T T C G A C A T G C G T A C G T A A C G T A C T G C G A T G T C A A C G T C G T A A C G T A G C T A G C T G T C A
A C G T A C G T A C G T A C G T A C G T G C T A A C G T C T A G G T A C G C T A G A C T C T G A G C A T C A T G G A T C A C G T

Foxd3/MA0041.1/Jaspar

Match Rank:4
Score:0.61
Offset:3
Orientation:forward strand
Alignment:ATAGAATGTMTATTTA
---GAATGTTTGTTT-
 C G T A A C G T T C G A C A T G C G T A C G T A A C G T A C T G C G A T G T C A A C G T C G T A A C G T A G C T A G C T G T C A
A C G T A C G T A C G T C T A G G C T A G C T A G A C T C T A G A C G T C G A T C A G T C T A G G A C T A C G T A G C T A C G T

OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer

Match Rank:5
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:ATAGAATGTMTATTTA--
---AYATGYATATGCATR
 C G T A A C G T T C G A C A T G C G T A C G T A A C G T A C T G C G A T G T C A A C G T C G T A A C G T A G C T A G C T G T C A A C G T A C G T
A C G T A C G T A C G T C T G A G A C T C T G A G A C T C T A G G A T C C T G A G A C T C T G A G A C T C T A G G A T C C T G A G C A T C T A G

Foxq1/MA0040.1/Jaspar

Match Rank:6
Score:0.58
Offset:3
Orientation:forward strand
Alignment:ATAGAATGTMTATTTA
---TATTGTTTATT--
 C G T A A C G T T C G A C A T G C G T A C G T A A C G T A C T G C G A T G T C A A C G T C G T A A C G T A G C T A G C T G T C A
A C G T A C G T A C G T G A C T C T G A G C A T C G A T A C T G A C G T A C G T A C G T C T G A A C G T C G A T A C G T A C G T

PH0148.1_Pou3f3/Jaspar

Match Rank:7
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-ATAGAATGTMTATTTA
TNNATTATGCATANNTT
 A C G T C G T A A C G T T C G A C A T G C G T A C G T A A C G T A C T G C G A T G T C A A C G T C G T A A C G T A G C T A G C T G T C A
G C A T G C A T G A C T G T C A C G A T C G A T C G T A A G C T C A T G G T A C C T G A C G A T C T G A G C A T G A C T C G A T C G A T

Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:8
Score:0.57
Offset:5
Orientation:forward strand
Alignment:ATAGAATGTMTATTTA-
-----ATGCATAATTCA
 C G T A A C G T T C G A C A T G C G T A C G T A A C G T A C T G C G A T G T C A A C G T C G T A A C G T A G C T A G C T G T C A A C G T
A C G T A C G T A C G T A C G T A C G T G C T A C G A T C T A G G T A C G C T A C G A T C G T A G C T A C G A T C A G T G A T C G C T A

Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer

Match Rank:9
Score:0.56
Offset:8
Orientation:reverse strand
Alignment:ATAGAATGTMTATTTA----
--------KCTATTTTTRGH
 C G T A A C G T T C G A C A T G C G T A C G T A A C G T A C T G C G A T G T C A A C G T C G T A A C G T A G C T A G C T G T C A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A T G A G T C G A C T C G T A C G A T G C A T G C A T G C A T C G A T C T G A C A T G G T A C

POU4F2/MA0683.1/Jaspar

Match Rank:10
Score:0.56
Offset:5
Orientation:forward strand
Alignment:ATAGAATGTMTATTTA-----
-----ATGCATAATTAATGAG
 C G T A A C G T T C G A C A T G C G T A C G T A A C G T A C T G C G A T G T C A A C G T C G T A A C G T A G C T A G C T G T C A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C T G A G A C T C T A G G T A C G C T A C G A T C G T A G C T A G C A T G C A T C T G A T C G A A C G T A C T G C T G A T C A G