Information for 6-GCTAAAGGCA (Motif 19)

A C T G A G T C C G A T G T C A T C G A C T G A A C T G A T C G T A G C G T C A
Reverse Opposite:
A C G T A T C G A T G C G T A C A G C T A G C T A C G T C G T A A C T G A G T C
p-value:1e-8
log p-value:-2.034e+01
Information Content per bp:1.845
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif2.50%
Number of Background Sequences with motif123.1
Percentage of Background Sequences with motif0.25%
Average Position of motif in Targets47.5 +/- 26.7bp
Average Position of motif in Background49.7 +/- 27.4bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:1
Score:0.63
Offset:1
Orientation:forward strand
Alignment:GCTAAAGGCA
-CTAATKGV-
 A C T G A G T C C G A T G T C A T C G A C T G A A C T G A T C G T A G C G T C A
A C G T A G T C C G A T C T G A C G T A A C G T C A G T T C A G T G A C A C G T

TFAP2C(var.2)/MA0814.1/Jaspar

Match Rank:2
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-GCTAAAGGCA
AGCCTCAGGCA
 A C G T A C T G A G T C C G A T G T C A T C G A C T G A A C T G A T C G T A G C G T C A
G T C A T A C G A T G C A G T C A G C T T A G C T C G A T C A G A T C G T A G C C G T A

TFAP2B(var.2)/MA0812.1/Jaspar

Match Rank:3
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-GCTAAAGGCA
AGCCTCAGGCA
 A C G T A C T G A G T C C G A T G T C A T C G A C T G A A C T G A T C G T A G C G T C A
G T C A T A C G A T G C A G T C A G C T T A G C T G C A T C A G T A C G T A G C C G T A

TFAP2A/MA0003.3/Jaspar

Match Rank:4
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-GCTAAAGGCA
NGCCTGAGGCN
 A C G T A C T G A G T C C G A T G T C A T C G A C T G A A C T G A T C G T A G C G T C A
G C A T A T C G A T G C A G T C A C G T A T C G T C G A T C A G A T C G A T G C C A T G

Barhl1/MA0877.1/Jaspar

Match Rank:5
Score:0.59
Offset:0
Orientation:forward strand
Alignment:GCTAAAGGCA
GCTAATTGCT
 A C T G A G T C C G A T G T C A T C G A C T G A A C T G A T C G T A G C G T C A
A T C G G A T C G C A T C G T A C T G A C G A T A G C T C T A G A T G C A G C T

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:6
Score:0.58
Offset:4
Orientation:forward strand
Alignment:GCTAAAGGCA-----
----AAGGCAAGTGT
 A C T G A G T C C G A T G T C A T C G A C T G A A C T G A T C G T A G C G T C A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T

BARHL2/MA0635.1/Jaspar

Match Rank:7
Score:0.57
Offset:0
Orientation:forward strand
Alignment:GCTAAAGGCA
GCTAAACGGT
 A C T G A G T C C G A T G T C A T C G A C T G A A C T G A T C G T A G C G T C A
T A C G G A T C C G A T C G T A C G T A C G T A G A T C C T A G T C A G G A C T

PB0190.1_Tcfap2b_2/Jaspar

Match Rank:8
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---GCTAAAGGCA--
ANTGCCTGAGGCAAN
 A C G T A C G T A C G T A C T G A G T C C G A T G T C A T C G A C T G A A C T G A T C G T A G C G T C A A C G T A C G T
C G T A C A G T G A C T C A T G G A T C G A T C C A G T T A C G T G C A C A T G C A T G A G T C C G T A G T C A G A C T

POL010.1_DCE_S_III/Jaspar

Match Rank:9
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-GCTAAAGGCA
NGCTN------
 A C G T A C T G A G T C C G A T G T C A T C G A C T G A A C T G A T C G T A G C G T C A
T A C G A C T G A G T C A C G T A T C G A C G T A C G T A C G T A C G T A C G T A C G T

Nr2e1/MA0676.1/Jaspar

Match Rank:10
Score:0.56
Offset:2
Orientation:forward strand
Alignment:GCTAAAGGCA-
--AAAAGTCAA
 A C T G A G T C C G A T G T C A T C G A C T G A A C T G A T C G T A G C G T C A A C G T
A C G T A C G T G C T A C T G A C T G A C T G A C T A G A G C T A G T C C G T A G C T A