Information for 6-ATGGCAACCGCGG (Motif 11)

C G T A A C G T C T A G A C T G A G T C C G T A C T G A A G T C G T A C A C T G A G T C T A C G T A C G
Reverse Opposite:
A G T C A G T C C T A G A G T C A C T G A C T G A G C T A C G T A C T G A G T C A G T C C G T A A C G T
p-value:1e-9
log p-value:-2.204e+01
Information Content per bp:1.841
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.96%
Number of Background Sequences with motif3.2
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets47.4 +/- 19.8bp
Average Position of motif in Background54.1 +/- 17.4bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:1
Score:0.73
Offset:-2
Orientation:forward strand
Alignment:--ATGGCAACCGCGG
SCCTAGCAACAG---
 A C G T A C G T C G T A A C G T C T A G A C T G A G T C C G T A C T G A A G T C G T A C A C T G A G T C T A C G T A C G
A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G A C G T A C G T A C G T

PB0055.1_Rfx4_1/Jaspar

Match Rank:2
Score:0.71
Offset:-4
Orientation:forward strand
Alignment:----ATGGCAACCGCGG
TACCATAGCAACGGT--
 A C G T A C G T A C G T A C G T C G T A A C G T C T A G A C T G A G T C C G T A C T G A A G T C G T A C A C T G A G T C T A C G T A C G
A G C T G T C A T A G C A T G C G T C A A G C T T C G A C T A G G A T C C T G A C T G A A G T C T A C G T C A G C G A T A C G T A C G T

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:3
Score:0.70
Offset:-4
Orientation:forward strand
Alignment:----ATGGCAACCGCGG
CCGCATAGCAACGGA--
 A C G T A C G T A C G T A C G T C G T A A C G T C T A G A C T G A G T C C G T A C T G A A G T C G T A C A C T G A G T C T A C G T A C G
A G T C A G T C T A C G A T G C G C T A G A C T T C G A C T A G G A T C C T G A T C G A A G T C T A C G T C A G C T G A A C G T A C G T

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:4
Score:0.68
Offset:-5
Orientation:reverse strand
Alignment:-----ATGGCAACCGCGG
TTGCCATGGCAACC----
 A C G T A C G T A C G T A C G T A C G T C G T A A C G T C T A G A C T G A G T C C G T A C T G A A G T C G T A C A C T G A G T C T A C G T A C G
A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A G A T C G T A C A C G T A C G T A C G T A C G T

Rfx1/MA0509.1/Jaspar

Match Rank:5
Score:0.67
Offset:-6
Orientation:forward strand
Alignment:------ATGGCAACCGCGG
GTTGCCATGGCAAC-----
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T C T A G A C T G A G T C C G T A C T G A A G T C G T A C A C T G A G T C T A C G T A C G
C T A G A C G T G A C T A C T G A G T C A G T C G C T A G C A T C T A G C T A G G T A C C T G A C T G A A G T C A C G T A C G T A C G T A C G T A C G T

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:6
Score:0.67
Offset:-5
Orientation:reverse strand
Alignment:-----ATGGCAACCGCGG
TTGCCATGGCAACN----
 A C G T A C G T A C G T A C G T A C G T C G T A A C G T C T A G A C T G A G T C C G T A C T G A A G T C G T A C A C T G A G T C T A C G T A C G
A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A G T C T G A C A C G T A C G T A C G T A C G T

RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer

Match Rank:7
Score:0.66
Offset:-6
Orientation:reverse strand
Alignment:------ATGGCAACCGCGG
GTTGCCATGGCAACCG---
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T C T A G A C T G A G T C C G T A C T G A A G T C G T A C A C T G A G T C T A C G T A C G
C T A G A G C T G A C T C T A G A G T C A G T C G T C A C G A T T C A G T C A G G A T C C T G A T C G A G A T C T A G C T C A G A C G T A C G T A C G T

PB0054.1_Rfx3_1/Jaspar

Match Rank:8
Score:0.64
Offset:-8
Orientation:forward strand
Alignment:--------ATGGCAACCGCGG--
TGTGACCCTTAGCAACCGATTAA
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T C T A G A C T G A G T C C G T A C T G A A G T C G T A C A C T G A G T C T A C G T A C G A C G T A C G T
G A C T C A T G A G C T A T C G G T C A G A T C T G A C A T G C G A C T A G C T T C G A C T A G G A T C C T G A C G T A A G T C T A G C T C A G C G T A G C A T G C A T G C T A G C T A

RFX2/MA0600.2/Jaspar

Match Rank:9
Score:0.63
Offset:-7
Orientation:reverse strand
Alignment:-------ATGGCAACCGCGG
CGTTGCCATGGCAACG----
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T C T A G A C T G A G T C C G T A C T G A A G T C G T A C A C T G A G T C T A C G T A C G
A T G C C T A G G A C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A C T G A A G T C T A C G A C G T A C G T A C G T A C G T

RFX5/MA0510.2/Jaspar

Match Rank:10
Score:0.63
Offset:-7
Orientation:reverse strand
Alignment:-------ATGGCAACCGCGG
NGTTGCCATGGCAACG----
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T C T A G A C T G A G T C C G T A C T G A A G T C G T A C A C T G A G T C T A C G T A C G
A T G C C T A G A C G T G A C T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C T G A T C G A G A T C T A C G A C G T A C G T A C G T A C G T