Information for 1-CCTAAHCCCC (Motif 1)

A G T C A G T C A G C T C G T A C G T A G T A C T G A C G A T C G T A C G T A C
Reverse Opposite:
C A T G A C T G C T A G A C T G C A T G A C G T C G A T C T G A A C T G C T A G
p-value:1e-17
log p-value:-3.957e+01
Information Content per bp:1.695
Number of Target Sequences with motif67.0
Percentage of Target Sequences with motif12.91%
Number of Background Sequences with motif1848.4
Percentage of Background Sequences with motif3.80%
Average Position of motif in Targets53.1 +/- 26.4bp
Average Position of motif in Background48.7 +/- 29.9bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.09
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Crx/MA0467.1/Jaspar

Match Rank:1
Score:0.74
Offset:1
Orientation:reverse strand
Alignment:CCTAAHCCCC--
-CTAATCCTCTT
 A G T C A G T C A G C T C G T A C G T A G T A C T G A C G A T C G T A C G T A C A C G T A C G T
A C G T G A T C C G A T C T G A C G T A A C G T A G T C G A T C A G C T G A T C G A C T A G C T

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:2
Score:0.73
Offset:0
Orientation:forward strand
Alignment:CCTAAHCCCC
GCTAATCC--
 A G T C A G T C A G C T C G T A C G T A G T A C T G A C G A T C G T A C G T A C
A T C G G A T C G C A T C G T A G T C A A C G T A T G C A G T C A C G T A C G T

GSC/MA0648.1/Jaspar

Match Rank:3
Score:0.73
Offset:0
Orientation:forward strand
Alignment:CCTAAHCCCC
GCTAATCCCC
 A G T C A G T C A G C T C G T A C G T A G T A C T G A C G A T C G T A C G T A C
T A C G G A T C A G C T C T G A C G T A A C G T A G T C A G T C A T G C G A T C

PITX3/MA0714.1/Jaspar

Match Rank:4
Score:0.73
Offset:0
Orientation:forward strand
Alignment:CCTAAHCCCC
CTTAATCCC-
 A G T C A G T C A G C T C G T A C G T A G T A C T G A C G A T C G T A C G T A C
T A G C G A C T G C A T C T G A C T G A C A G T G T A C A G T C G A T C A C G T

GSC2/MA0891.1/Jaspar

Match Rank:5
Score:0.73
Offset:0
Orientation:forward strand
Alignment:CCTAAHCCCC
CCTAATCCGC
 A G T C A G T C A G C T C G T A C G T A G T A C T G A C G A T C G T A C G T A C
T G A C G A T C C G A T G C T A G C T A A C G T G T A C A G T C A T C G G A T C

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:6
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:CCTAAHCCCC
-YTAATCCY-
 A G T C A G T C A G C T C G T A C G T A G T A C T G A C G A T C G T A C G T A C
A C G T G A T C G C A T C G T A C G T A A C G T G A T C G A T C A G T C A C G T

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:7
Score:0.70
Offset:0
Orientation:forward strand
Alignment:CCTAAHCCCC
NYTAATCCYB
 A G T C A G T C A G C T C G T A C G T A G T A C T G A C G A T C G T A C G T A C
A T C G G A C T C G A T C G T A C G T A C A G T G A T C G A T C G A T C A G C T

Pitx1/MA0682.1/Jaspar

Match Rank:8
Score:0.70
Offset:1
Orientation:forward strand
Alignment:CCTAAHCCCC
-TTAATCCC-
 A G T C A G T C A G C T C G T A C G T A G T A C T G A C G A T C G T A C G T A C
A C G T G A C T G C A T T C G A C G T A C A G T G A T C G A T C G T A C A C G T

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:9
Score:0.70
Offset:2
Orientation:forward strand
Alignment:CCTAAHCCCC
--TAATCCCN
 A G T C A G T C A G C T C G T A C G T A G T A C T G A C G A T C G T A C G T A C
A C G T A C G T C G A T C T G A C G T A C A G T A G T C G A T C G A T C A C T G

PH0139.1_Pitx3/Jaspar

Match Rank:10
Score:0.67
Offset:-4
Orientation:reverse strand
Alignment:----CCTAAHCCCC--
GNNAGCTAATCCCCCN
 A C G T A C G T A C G T A C G T A G T C A G T C A G C T C G T A C G T A G T A C T G A C G A T C G T A C G T A C A C G T A C G T
A T C G T A C G G A T C G T C A T A C G G T A C C G A T C G T A C T G A A C G T A G T C A G T C G A T C A T G C A G T C A G C T