Information for 6-AKCAGTAGCAAMR (Motif 8)

G C T A A C T G A G T C C G T A A C T G A C G T C G T A A C T G A G T C C G T A C G T A G T C A C T A G
Reverse Opposite:
G A C T A C G T A C G T A C G T C T A G A G T C A C G T C G T A A G T C A C G T A C T G G T A C C A G T
p-value:1e-10
log p-value:-2.449e+01
Information Content per bp:1.886
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.73%
Number of Background Sequences with motif3.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets56.0 +/- 20.1bp
Average Position of motif in Background32.2 +/- 7.4bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0050.1_Osr1_1/Jaspar

Match Rank:1
Score:0.78
Offset:-3
Orientation:forward strand
Alignment:---AKCAGTAGCAAMR
ATTTACAGTAGCAAAA
 A C G T A C G T A C G T G C T A A C T G A G T C C G T A A C T G A C G T C G T A A C T G A G T C C G T A C G T A G T C A C T A G
G C A T G C A T C G A T G C A T G T C A G A T C C T G A A C T G C G A T C T G A C T A G A G T C G C T A T G C A G C T A C T G A

PB0051.1_Osr2_1/Jaspar

Match Rank:2
Score:0.74
Offset:-3
Orientation:forward strand
Alignment:---AKCAGTAGCAAMR
ATGTACAGTAGCAAAG
 A C G T A C G T A C G T G C T A A C T G A G T C C G T A A C T G A C G T C G T A A C T G A G T C C G T A C G T A G T C A C T A G
G C A T C G A T T C A G G C A T G T C A G A T C C T G A A C T G C G A T C T G A A C T G A G T C G C T A G T C A G C T A C T A G

PB0054.1_Rfx3_1/Jaspar

Match Rank:3
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----AKCAGTAGCAAMR------
TGTGACCCTTAGCAACCGATTAA
 A C G T A C G T A C G T A C G T G C T A A C T G A G T C C G T A A C T G A C G T C G T A A C T G A G T C C G T A C G T A G T C A C T A G A C G T A C G T A C G T A C G T A C G T A C G T
G A C T C A T G A G C T A T C G G T C A G A T C T G A C A T G C G A C T A G C T T C G A C T A G G A T C C T G A C G T A A G T C T A G C T C A G C G T A G C A T G C A T G C T A G C T A

PB0055.1_Rfx4_1/Jaspar

Match Rank:4
Score:0.60
Offset:0
Orientation:forward strand
Alignment:AKCAGTAGCAAMR--
TACCATAGCAACGGT
 G C T A A C T G A G T C C G T A A C T G A C G T C G T A A C T G A G T C C G T A C G T A G T C A C T A G A C G T A C G T
A G C T G T C A T A G C A T G C G T C A A G C T T C G A C T A G G A T C C T G A C T G A A G T C T A C G T C A G C G A T

PB0155.1_Osr2_2/Jaspar

Match Rank:5
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---AKCAGTAGCAAMR
NNTGTAGGTAGCANNT
 A C G T A C G T A C G T G C T A A C T G A G T C C G T A A C T G A C G T C G T A A C T G A G T C C G T A C G T A G T C A C T A G
A C T G C T A G C G A T C A T G A G C T C G T A C T A G A C T G C G A T C T G A T A C G A G T C C T G A C T G A C T A G G A C T

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:6
Score:0.59
Offset:0
Orientation:forward strand
Alignment:AKCAGTAGCAAMR--
CCGCATAGCAACGGA
 G C T A A C T G A G T C C G T A A C T G A C G T C G T A A C T G A G T C C G T A C G T A G T C A C T A G A C G T A C G T
A G T C A G T C T A C G A T G C G C T A G A C T T C G A C T A G G A T C C T G A T C G A A G T C T A C G T C A G C T G A

PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer

Match Rank:7
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--AKCAGTAGCAAMR
ADGGYAGYAGCATCT
 A C G T A C G T G C T A A C T G A G T C C G T A A C T G A C G T C G T A A C T G A G T C C G T A C G T A G T C A C T A G
C T G A C G A T C T A G T C A G G A T C C T G A T C A G G A T C C T G A A C T G A G T C G C T A A C G T A G T C G C A T

PB0154.1_Osr1_2/Jaspar

Match Rank:8
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---AKCAGTAGCAAMR
NNNTTAGGTAGCNTNT
 A C G T A C G T A C G T G C T A A C T G A G T C C G T A A C T G A C G T C G T A A C T G A G T C C G T A C G T A G T C A C T A G
A C T G C A G T G C T A C A G T A G C T C G T A C T A G A C T G C G A T C T G A C T A G A G T C C T G A C G A T C T A G G A C T

CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer

Match Rank:9
Score:0.55
Offset:1
Orientation:forward strand
Alignment:AKCAGTAGCAAMR
-NATGTTGCAA--
 G C T A A C T G A G T C C G T A A C T G A C G T C G T A A C T G A G T C C G T A C G T A G T C A C T A G
A C G T C T A G T C G A C G A T C T A G G C A T C A G T C T A G G A T C C G T A G T C A A C G T A C G T

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.55
Offset:2
Orientation:forward strand
Alignment:AKCAGTAGCAAMR-
--SCCTAGCAACAG
 G C T A A C T G A G T C C G T A A C T G A C G T C G T A A C T G A G T C C G T A C G T A G T C A C T A G A C G T
A C G T A C G T A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G