p-value: | 1e-11 |
log p-value: | -2.539e+01 |
Information Content per bp: | 1.831 |
Number of Target Sequences with motif | 5.0 |
Percentage of Target Sequences with motif | 0.63% |
Number of Background Sequences with motif | 1.1 |
Percentage of Background Sequences with motif | 0.00% |
Average Position of motif in Targets | 49.2 +/- 15.8bp |
Average Position of motif in Background | 69.0 +/- 0.0bp |
Strand Bias (log2 ratio + to - strand density) | 2.0 |
Multiplicity (# of sites on avg that occur together) | 1.00 |
Motif File: | file (matrix) reverse opposite |
SVG Files for Logos: | forward logo reverse opposite |
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer
Match Rank: | 1 |
Score: | 0.65 |
Offset: | 0 |
Orientation: | forward strand |
Alignment: | AAGTRGGRCASSTKCM AAYTAGGTCA------ |
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RORA(var.2)/MA0072.1/Jaspar
Match Rank: | 2 |
Score: | 0.63 |
Offset: | -3 |
Orientation: | forward strand |
Alignment: | ---AAGTRGGRCASSTKCM TATAAGTAGGTCAA----- |
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HES5/MA0821.1/Jaspar
Match Rank: | 3 |
Score: | 0.59 |
Offset: | 5 |
Orientation: | forward strand |
Alignment: | AAGTRGGRCASSTKCM- -----CGGCACGTGCCA |
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HEY2/MA0649.1/Jaspar
Match Rank: | 4 |
Score: | 0.59 |
Offset: | 6 |
Orientation: | forward strand |
Alignment: | AAGTRGGRCASSTKCM ------GACACGTGCC |
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PB0114.1_Egr1_2/Jaspar
Match Rank: | 5 |
Score: | 0.58 |
Offset: | -4 |
Orientation: | forward strand |
Alignment: | ----AAGTRGGRCASSTKCM TGCGGAGTGGGACTGG---- |
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HES7/MA0822.1/Jaspar
Match Rank: | 6 |
Score: | 0.58 |
Offset: | 5 |
Orientation: | forward strand |
Alignment: | AAGTRGGRCASSTKCM- -----TGGCACGTGCCA |
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NKX2-3/MA0672.1/Jaspar
Match Rank: | 7 |
Score: | 0.58 |
Offset: | -3 |
Orientation: | reverse strand |
Alignment: | ---AAGTRGGRCASSTKCM NTCAAGTGGN--------- |
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Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer
Match Rank: | 8 |
Score: | 0.58 |
Offset: | 5 |
Orientation: | forward strand |
Alignment: | AAGTRGGRCASSTKCM- -----SNGCACCTGCHS |
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Hes2/MA0616.1/Jaspar
Match Rank: | 9 |
Score: | 0.57 |
Offset: | 2 |
Orientation: | forward strand |
Alignment: | AAGTRGGRCASSTKCM --TAACGACACGTGC- |
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Nkx3-1/MA0124.2/Jaspar
Match Rank: | 10 |
Score: | 0.57 |
Offset: | -2 |
Orientation: | reverse strand |
Alignment: | --AAGTRGGRCASSTKCM TTAAGTGGT--------- |
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