Information for 15-TTKSCTCCMYGCC (Motif 27)

A C G T A G C T A C G T A T C G A G T C A C G T A G T C A G T C G T C A A G C T A C T G A T G C A G T C
Reverse Opposite:
A C T G A T C G A G T C C T G A A C G T A C T G A C T G C G T A A C T G A T G C G T C A C T G A C G T A
p-value:1e-7
log p-value:-1.823e+01
Information Content per bp:1.875
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.76%
Number of Background Sequences with motif9.9
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets32.3 +/- 18.0bp
Average Position of motif in Background49.3 +/- 24.9bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:1
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:TTKSCTCCMYGCC-
TTGGCATGGTGCCA
 A C G T A G C T A C G T A T C G A G T C A C G T A G T C A G T C G T C A A G C T A C T G A T G C A G T C A C G T
G A C T A C G T A C T G A C T G A G T C C G T A G A C T A T C G A T C G C A G T A C T G A G T C A G T C C G T A

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:2
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-TTKSCTCCMYGCC--
CTTGGCANNNTGCCAA
 A C G T A C G T A G C T A C G T A T C G A G T C A C G T A G T C A G T C G T C A A G C T A C T G A T G C A G T C A C G T A C G T
A G T C G A C T C A G T A C T G C T A G T G A C G C T A A T G C G C A T A T C G C G A T A C T G G A T C G T A C G T C A C T G A

PB0164.1_Smad3_2/Jaspar

Match Rank:3
Score:0.61
Offset:2
Orientation:forward strand
Alignment:TTKSCTCCMYGCC------
--TACGCCCCGCCACTCTG
 A C G T A G C T A C G T A T C G A G T C A C G T A G T C A G T C G T C A A G C T A C T G A T G C A G T C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C A G T G T C A G T A C A C T G G A T C A G T C T A G C A T G C T A C G A G T C G T A C G T C A G T A C G A C T A G T C G A C T A C T G

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:4
Score:0.60
Offset:0
Orientation:forward strand
Alignment:TTKSCTCCMYGCC-
CTGGCAGNCTGCCA
 A C G T A G C T A C G T A T C G A G T C A C G T A G T C A G T C G T C A A G C T A C T G A T G C A G T C A C G T
A G T C C G A T A C T G A T C G T G A C G C T A C A T G A T C G T G A C C G A T A C T G T A G C G T A C G T C A

POL013.1_MED-1/Jaspar

Match Rank:5
Score:0.58
Offset:3
Orientation:forward strand
Alignment:TTKSCTCCMYGCC
---GCTCCG----
 A C G T A G C T A C G T A T C G A G T C A C G T A G T C A G T C G T C A A G C T A C T G A T G C A G T C
A C G T A C G T A C G T A C T G A G T C A C G T A G T C A G T C A T C G A C G T A C G T A C G T A C G T

PB0039.1_Klf7_1/Jaspar

Match Rank:6
Score:0.56
Offset:2
Orientation:forward strand
Alignment:TTKSCTCCMYGCC-----
--TCGACCCCGCCCCTAT
 A C G T A G C T A C G T A T C G A G T C A C G T A G T C A G T C G T C A A G C T A C T G A T G C A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G A C T A G T C C T A G T C G A G T A C G T A C T G A C G A T C C T A G A G T C A G T C A G T C G A T C G A C T G C T A C G A T

Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-TTKSCTCCMYGCC
CNGTCCTCCC----
 A C G T A C G T A G C T A C G T A T C G A G T C A C G T A G T C A G T C G T C A A G C T A C T G A T G C A G T C
A T G C T C G A T A C G A C G T A T G C A G T C A C G T A G T C A G T C G A T C A C G T A C G T A C G T A C G T

E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer

Match Rank:8
Score:0.55
Offset:5
Orientation:reverse strand
Alignment:TTKSCTCCMYGCC--
-----TTCCCGCCWG
 A C G T A G C T A C G T A T C G A G T C A C G T A G T C A G T C G T C A A G C T A C T G A T G C A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A G C T A C G T A T G C A T G C A G T C A C T G A G T C A T G C G C T A A T C G

SP3/MA0746.1/Jaspar

Match Rank:9
Score:0.55
Offset:5
Orientation:forward strand
Alignment:TTKSCTCCMYGCC---
-----GCCACGCCCCC
 A C G T A G C T A C G T A T C G A G T C A C G T A G T C A G T C G T C A A G C T A C T G A T G C A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T A C G G T A C G T A C T G C A G A T C C T A G G T A C G T A C A G T C G T A C G A T C

PB0107.1_Ascl2_2/Jaspar

Match Rank:10
Score:0.55
Offset:2
Orientation:forward strand
Alignment:TTKSCTCCMYGCC-----
--CTATCCCCGCCCTATT
 A C G T A G C T A C G T A T C G A G T C A C G T A G T C A G T C G T C A A G C T A C T G A T G C A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A T G C G A C T T G C A C G A T G T A C T A G C G T A C T G A C C T A G A G T C G A T C G A T C A G C T C T G A A C G T G A C T