Information for 3-AAAGTMTYTTATTACC (Motif 4)

G T C A C G T A C G T A A C T G C G A T G T A C A C G T A G T C A C G T A G C T C G T A A C G T C G A T C G T A A T G C A G T C
Reverse Opposite:
C T A G A T C G C G A T C G T A C G T A C G A T C T G A C G T A T C A G C G T A C A T G C G T A G T A C A C G T C G A T A C G T
p-value:1e-12
log p-value:-2.793e+01
Information Content per bp:1.754
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif1.04%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets59.4 +/- 14.7bp
Average Position of motif in Background62.6 +/- 15.1bp
Strand Bias (log2 ratio + to - strand density)-2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0046.1_Hoxa10/Jaspar

Match Rank:1
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:AAAGTMTYTTATTACC--
--TNAATTTTATTACCTN
 G T C A C G T A C G T A A C T G C G A T G T A C A C G T A G T C A C G T A G C T C G T A A C G T C G A T C G T A A T G C A G T C A C G T A C G T
A C G T A C G T G C A T C A T G G T C A C G T A C G A T C G A T G C A T C G A T C G T A G A C T C A G T C T G A A G T C T G A C C A G T G T C A

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:2
Score:0.61
Offset:5
Orientation:reverse strand
Alignment:AAAGTMTYTTATTACC
-----NTTTTATGAC-
 G T C A C G T A C G T A A C T G C G A T G T A C A C G T A G T C A C G T A G C T C G T A A C G T C G A T C G T A A T G C A G T C
A C G T A C G T A C G T A C G T A C G T C T G A C G A T A C G T A C G T A C G T C G T A A C G T C A T G C T G A A G T C A C G T

HOXA10/MA0899.1/Jaspar

Match Rank:3
Score:0.61
Offset:5
Orientation:reverse strand
Alignment:AAAGTMTYTTATTACC
-----NTTTTATTACN
 G T C A C G T A C G T A A C T G C G A T G T A C A C G T A G T C A C G T A G C T C G T A A C G T C G A T C G T A A T G C A G T C
A C G T A C G T A C G T A C G T A C G T C A G T C A G T C A G T G C A T G C A T C G T A A G C T A C G T C T G A A G T C G A T C

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:4
Score:0.60
Offset:6
Orientation:reverse strand
Alignment:AAAGTMTYTTATTACC
------TTTTATTRGN
 G T C A C G T A C G T A A C T G C G A T G T A C A C G T A G T C A C G T A G C T C G T A A C G T C G A T C G T A A T G C A G T C
A C G T A C G T A C G T A C G T A C G T A C G T C G A T A C G T A C G T C G A T C G T A G C A T C A G T C T G A A T C G G C T A

HOXD13/MA0909.1/Jaspar

Match Rank:5
Score:0.60
Offset:5
Orientation:reverse strand
Alignment:AAAGTMTYTTATTACC
-----NTTTTATTGG-
 G T C A C G T A C G T A A C T G C G A T G T A C A C G T A G T C A C G T A G C T C G T A A C G T C G A T C G T A A T G C A G T C
A C G T A C G T A C G T A C G T A C G T C A G T C A G T A C G T C G A T C G A T C T G A G C A T C A G T C T A G T A C G A C G T

PH0078.1_Hoxd13/Jaspar

Match Rank:6
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:AAAGTMTYTTATTACC--
--NNANTTTTATTGGNNN
 G T C A C G T A C G T A A C T G C G A T G T A C A C G T A G T C A C G T A G C T C G T A A C G T C G A T C G T A A T G C A G T C A C G T A C G T
A C G T A C G T C G T A C A T G C T G A C T G A C A G T C G A T C G A T G C A T C T G A G A C T C G A T C T A G T C A G C G A T G C T A C A T G

PH0075.1_Hoxd10/Jaspar

Match Rank:7
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:AAAGTMTYTTATTACC--
-NTNAATTTTATTGNATT
 G T C A C G T A C G T A A C T G C G A T G T A C A C G T A G T C A C G T A G C T C G T A A C G T C G A T C G T A A T G C A G T C A C G T A C G T
A C G T C G T A G C A T G C T A G C T A C T G A A G C T C G A T C G A T C G A T C T G A G C A T C A G T C T A G A G T C T G C A G A C T A C G T

CDX1/MA0878.1/Jaspar

Match Rank:8
Score:0.59
Offset:6
Orientation:reverse strand
Alignment:AAAGTMTYTTATTACC
------TTTTATTGC-
 G T C A C G T A C G T A A C T G C G A T G T A C A C G T A G T C A C G T A G C T C G T A A C G T C G A T C G T A A T G C A G T C
A C G T A C G T A C G T A C G T A C G T A C G T C A G T C G A T G C A T C G A T C G T A A G C T C A G T C T A G A G T C A C G T

PH0013.1_Cdx2/Jaspar

Match Rank:9
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:AAAGTMTYTTATTACC---
---NAATTTTATTACCNNN
 G T C A C G T A C G T A A C T G C G A T G T A C A C G T A G T C A C G T A G C T C G T A A C G T C G A T C G T A A T G C A G T C A C G T A C G T A C G T
A C G T A C G T A C G T C T G A G T C A C T G A C G A T C G A T C G A T C G A T C G T A A G C T C A G T C T G A A G T C G A T C A C G T A G C T G C A T

PH0012.1_Cdx1/Jaspar

Match Rank:10
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:AAAGTMTYTTATTACC---
---NAATTTTATTACCTNN
 G T C A C G T A C G T A A C T G C G A T G T A C A C G T A G T C A C G T A G C T C G T A A C G T C G A T C G T A A T G C A G T C A C G T A C G T A C G T
A C G T A C G T A C G T C G A T G T C A T C G A C G A T C G A T C G A T C G A T C G T A A G C T C A G T C T G A A G T C G A T C A C G T G A C T G C T A