Information for 9-CCATCGACAC (Motif 32)

A G T C A G T C C G T A A C G T A G T C A T C G C G T A G T A C C G T A A G T C
Reverse Opposite:
A C T G A C G T A C T G A C G T A T G C C T A G C G T A A C G T A C T G A C T G
p-value:1e-5
log p-value:-1.264e+01
Information Content per bp:1.908
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif1.04%
Number of Background Sequences with motif23.0
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets56.9 +/- 33.3bp
Average Position of motif in Background46.5 +/- 39.9bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.40
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

FOXH1/MA0479.1/Jaspar

Match Rank:1
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--CCATCGACAC
TCCAATCCACA-
 A C G T A C G T A G T C A G T C C G T A A C G T A G T C A T C G C G T A G T A C C G T A A G T C
A G C T A G T C T A G C C G T A C G T A A C G T G T A C G T A C C G T A A G T C C G T A A C G T

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:2
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--CCATCGACAC
GGCCATTAAC--
 A C G T A C G T A G T C A G T C C G T A A C G T A G T C A T C G C G T A G T A C C G T A A G T C
C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C A C G T A C G T

PB0035.1_Irf5_1/Jaspar

Match Rank:3
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--CCATCGACAC---
ATAAACCGAAACCAA
 A C G T A C G T A G T C A G T C C G T A A C G T A G T C A T C G C G T A G T A C C G T A A G T C A C G T A C G T A C G T
C G T A C G A T C T G A C G T A C T G A G A T C G A T C C T A G C T G A C G T A C G T A T A G C G A T C C T G A T C G A

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:4
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---CCATCGACAC-
TTGCCATGGCAACC
 A C G T A C G T A C G T A G T C A G T C C G T A A C G T A G T C A T C G C G T A G T A C C G T A A G T C A C G T
A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A G A T C G T A C

PB0036.1_Irf6_1/Jaspar

Match Rank:5
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-CCATCGACAC------
CTGATCGAAACCAAAGT
 A C G T A G T C A G T C C G T A A C G T A G T C A T C G C G T A G T A C C G T A A G T C A C G T A C G T A C G T A C G T A C G T A C G T
G T A C C G A T C A T G C T G A G A C T G A T C C T A G T C G A C G T A C G T A T A G C A G T C T C G A T G C A C G T A C A T G C G A T

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:6
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---CCATCGACAC-
TTGCCATGGCAACN
 A C G T A C G T A C G T A G T C A G T C C G T A A C G T A G T C A T C G C G T A G T A C C G T A A G T C A C G T
A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A G T C T G A C

Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-CCATCGACAC-
SSAATCCACANN
 A C G T A G T C A G T C C G T A A C G T A G T C A T C G C G T A G T A C C G T A A G T C A C G T
A T G C T A G C C T G A C G T A A C G T G T A C G T A C C T G A A G T C C G T A C T G A G T A C

PB0034.1_Irf4_1/Jaspar

Match Rank:8
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-CCATCGACAC----
CGTATCGAAACCAAA
 A C G T A G T C A G T C C G T A A C G T A G T C A T C G C G T A G T A C C G T A A G T C A C G T A C G T A C G T A C G T
T G A C C T A G C G A T C G T A G A C T A G T C C T A G T C G A C G T A C G T A T A G C G A T C C T G A G T C A C G T A

Rfx1/MA0509.1/Jaspar

Match Rank:9
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----CCATCGACAC
GTTGCCATGGCAAC
 A C G T A C G T A C G T A C G T A G T C A G T C C G T A A C G T A G T C A T C G C G T A G T A C C G T A A G T C
C T A G A C G T G A C T A C T G A G T C A G T C G C T A G C A T C T A G C T A G G T A C C T G A C T G A A G T C

RFX3/MA0798.1/Jaspar

Match Rank:10
Score:0.57
Offset:-5
Orientation:forward strand
Alignment:-----CCATCGACAC-
CGTTGCCATGGCAACG
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G T A A C G T A G T C A T C G C G T A G T A C C G T A A G T C A C G T
A T G C C T A G G A C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A T C G A G A T C T A C G