Information for 6-AGGTGABCTG (Motif 29)

C T G A C T A G C T A G G A C T A C T G T C G A A T G C A T G C C G A T A C T G
Reverse Opposite:
G T A C C G T A A T C G T A C G A G C T A G T C C T G A A G T C G A T C G A C T
p-value:1e-5
log p-value:-1.377e+01
Information Content per bp:1.707
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif3.34%
Number of Background Sequences with motif364.2
Percentage of Background Sequences with motif0.75%
Average Position of motif in Targets61.8 +/- 22.1bp
Average Position of motif in Background47.8 +/- 28.5bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.12
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NR4A2/MA0160.1/Jaspar

Match Rank:1
Score:0.69
Offset:2
Orientation:reverse strand
Alignment:AGGTGABCTG
--GTGACCTT
 C T G A C T A G C T A G G A C T A C T G T C G A A T G C A T G C C G A T A C T G
A C G T A C G T A C T G A C G T C T A G C G T A A G T C G T A C A G C T A G C T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:2
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:AGGTGABCTG
---TGACCT-
 C T G A C T A G C T A G G A C T A C T G T C G A A T G C A T G C C G A T A C T G
A C G T A C G T A C G T A C G T C A T G G C T A G T A C G T A C G A C T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:3
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:AGGTGABCTG-
---TGACCTYA
 C T G A C T A G C T A G G A C T A C T G T C G A A T G C A T G C C G A T A C T G A C G T
A C G T A C G T A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A

PB0053.1_Rara_1/Jaspar

Match Rank:4
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-AGGTGABCTG-----
NNNGTGACCTTTGNNN
 A C G T C T G A C T A G C T A G G A C T A C T G T C G A A T G C A T G C C G A T A C T G A C G T A C G T A C G T A C G T A C G T
G T A C C G T A A T C G C T A G A G C T T C A G G T C A G T A C G T A C A G C T A G C T C G A T C A T G T C G A C A T G G T C A

USF2/MA0526.1/Jaspar

Match Rank:5
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---AGGTGABCTG
GTCATGTGACC--
 A C G T A C G T A C G T C T G A C T A G C T A G G A C T A C T G T C G A A T G C A T G C C G A T A C T G
T C A G A G C T A G T C C G T A A G C T A C T G A C G T A C T G T C G A A G T C G A T C A C G T A C G T

USF1/MA0093.2/Jaspar

Match Rank:6
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---AGGTGABCTG
GCCACGTGACC--
 A C G T A C G T A C G T C T G A C T A G C T A G G A C T A C T G T C G A A T G C A T G C C G A T A C T G
T C A G A G T C G T A C C G T A A G T C T C A G A C G T A C T G C T G A A G T C G A T C A C G T A C G T

E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:7
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---AGGTGABCTG
NNCAGGTGNN---
 A C G T A C G T A C G T C T G A C T A G C T A G G A C T A C T G T C G A A T G C A T G C C G A T A C T G
C A G T T A C G A G T C C G T A A C T G A C T G A C G T A C T G A C G T T A C G A C G T A C G T A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:8
Score:0.61
Offset:6
Orientation:forward strand
Alignment:AGGTGABCTG--
------GCTGTG
 C T G A C T A G C T A G G A C T A C T G T C G A A T G C A T G C C G A T A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T A C G T A G C C A G T A T C G G A C T A T C G

ZEB1/MA0103.2/Jaspar

Match Rank:9
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-AGGTGABCTG
CAGGTGAGG--
 A C G T C T G A C T A G C T A G G A C T A C T G T C G A A T G C A T G C C G A T A C T G
A G T C C G T A A C T G A C T G A C G T C T A G G C T A C T A G A C T G A C G T A C G T

E-box(bHLH)/Promoter/Homer

Match Rank:10
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--AGGTGABCTG
TCACGTGACCGG
 A C G T A C G T C T G A C T A G C T A G G A C T A C T G T C G A A T G C A T G C C G A T A C T G
A G C T A G T C C G T A A G T C T C A G C G A T A C T G T C G A A T G C T A G C T A C G T A C G