Information for 3-CAGGCCATGAAGC (Motif 3)

A G T C C G T A A C T G A T C G A T G C G T A C G C T A C G A T C T A G C T G A C G T A T A C G A G T C
Reverse Opposite:
C T A G A G T C A C G T A G C T A G T C C G T A C A G T C A T G A T C G A T G C G T A C C G A T A C T G
p-value:1e-11
log p-value:-2.666e+01
Information Content per bp:1.775
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif1.56%
Number of Background Sequences with motif45.0
Percentage of Background Sequences with motif0.09%
Average Position of motif in Targets55.8 +/- 28.9bp
Average Position of motif in Background48.3 +/- 23.4bp
Strand Bias (log2 ratio + to - strand density)1.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Zfx/MA0146.2/Jaspar

Match Rank:1
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:CAGGCCATGAAGC-
CAGGCCNNGGCCNN
 A G T C C G T A A C T G A T C G A T G C G T A C G C T A C G A T C T A G C T G A C G T A T A C G A G T C A C G T
A T G C C T G A C T A G A C T G T A G C A G T C A C G T T G A C C T A G T A C G G A T C A T G C T A G C T A G C

ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:2
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-CAGGCCATGAAGC------
YCAGGCWCAGTACCAGGCTC
 A C G T A G T C C G T A A C T G A T C G A T G C G T A C G C T A C G A T C T A G C T G A C G T A T A C G A G T C A C G T A C G T A C G T A C G T A C G T A C G T
A G T C T G A C G C T A C T A G C T A G G A T C G C A T A T G C C G T A C T A G C A G T T C G A A T G C A G T C C G T A C A T G C T A G G T A C G A C T A T G C

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:3
Score:0.58
Offset:2
Orientation:forward strand
Alignment:CAGGCCATGAAGC-
--GGCCATAAATCA
 A G T C C G T A A C T G A T C G A T G C G T A C G C T A C G A T C T A G C T G A C G T A T A C G A G T C A C G T
A C G T A C G T C T A G T A C G A G T C G T A C T C G A A C G T G T C A G C T A G C T A C G A T A G T C G C T A

POL008.1_DCE_S_I/Jaspar

Match Rank:4
Score:0.57
Offset:7
Orientation:reverse strand
Alignment:CAGGCCATGAAGC
-------NGAAGC
 A G T C C G T A A C T G A T C G A T G C G T A C G C T A C G A T C T A G C T G A C G T A T A C G A G T C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G T A C G T G C A T C G A T A C G T G A C

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:5
Score:0.57
Offset:1
Orientation:forward strand
Alignment:CAGGCCATGAAGC
-AGGCCTNG----
 A G T C C G T A A C T G A T C G A T G C G T A C G C T A C G A T C T A G C T G A C G T A T A C G A G T C
A C G T C T G A A C T G A C T G A G T C A G T C A G C T C T A G T A C G A C G T A C G T A C G T A C G T

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:6
Score:0.57
Offset:2
Orientation:forward strand
Alignment:CAGGCCATGAAGC-
--GGCCATAAATCA
 A G T C C G T A A C T G A T C G A T G C G T A C G C T A C G A T C T A G C T G A C G T A T A C G A G T C A C G T
A C G T A C G T C T A G T A C G G A T C G T A C C T G A A G C T T G C A G C T A C G T A G C A T G A T C G C T A

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:7
Score:0.57
Offset:1
Orientation:forward strand
Alignment:CAGGCCATGAAGC
-AGGCCTAG----
 A G T C C G T A A C T G A T C G A T G C G T A C G C T A C G A T C T A G C T G A C G T A T A C G A G T C
A C G T T G C A A C T G T A C G A T G C A G T C G A C T T C G A A T C G A C G T A C G T A C G T A C G T

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:8
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:CAGGCCATGAAGC
-TGACCTTGAN--
 A G T C C G T A A C T G A T C G A T G C G T A C G C T A C G A T C T A G C T G A C G T A T A C G A G T C
A C G T G C A T C T A G C T G A T G A C G A T C A G C T C A G T A T C G C T G A T G C A A C G T A C G T

ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:9
Score:0.54
Offset:2
Orientation:forward strand
Alignment:CAGGCCATGAAGC-
--GRTGMTRGAGCC
 A G T C C G T A A C T G A T C G A T G C G T A C G C T A C G A T C T A G C T G A C G T A T A C G A G T C A C G T
A C G T A C G T A T C G T C G A G A C T A T C G T G A C A C G T C T A G A C T G C G T A A C T G A G T C G T A C

CDX2/MA0465.1/Jaspar

Match Rank:10
Score:0.54
Offset:1
Orientation:forward strand
Alignment:CAGGCCATGAAGC
-AAGCCATAAAA-
 A G T C C G T A A C T G A T C G A T G C G T A C G C T A C G A T C T A G C T G A C G T A T A C G A G T C
A C G T T C G A C T G A T C A G A G T C G T A C C G T A A C G T C G T A C G T A C G T A T C G A A C G T