Information for 21-GGATGATGGATGG (Motif 35)

C T A G A C T G T G C A A C G T A C T G C G T A A C G T A C T G A C T G C G T A A C G T A C T G A C T G
Reverse Opposite:
A G T C A G T C C G T A A C G T G T A C A G T C C G T A A C G T A G T C C G T A A C G T A G T C A G T C
p-value:1e-6
log p-value:-1.519e+01
Information Content per bp:1.934
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.67%
Number of Background Sequences with motif1.1
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets43.2 +/- 24.5bp
Average Position of motif in Background49.2 +/- 14.8bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.33
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:1
Score:0.81
Offset:2
Orientation:reverse strand
Alignment:GGATGATGGATGG-
--ATGATKGATGRC
 C T A G A C T G T G C A A C G T A C T G C G T A A C G T A C T G A C T G C G T A A C G T A C T G A C T G A C G T
A C G T A C G T C T G A C G A T A T C G C G T A C G A T C A G T C T A G C G T A C G A T A C T G C T G A A T G C

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:2
Score:0.71
Offset:3
Orientation:reverse strand
Alignment:GGATGATGGATGG
---TGATTGATGA
 C T A G A C T G T G C A A C G T A C T G C G T A A C G T A C T G A C T G C G T A A C G T A C T G A C T G
A C G T A C G T A C G T C G A T T C A G G T C A A G C T C G A T C T A G C G T A A C G T C A T G C T G A

Hoxa9/MA0594.1/Jaspar

Match Rank:3
Score:0.71
Offset:3
Orientation:reverse strand
Alignment:GGATGATGGATGG-
---TGATTTATGGC
 C T A G A C T G T G C A A C G T A C T G C G T A A C G T A C T G A C T G C G T A A C G T A C T G A C T G A C G T
A C G T A C G T A C G T C G A T C T A G G C T A A C G T C G A T A C G T C G T A A G C T C A T G C T A G A T G C

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:4
Score:0.70
Offset:3
Orientation:forward strand
Alignment:GGATGATGGATGG--
---TGATTRATGGCY
 C T A G A C T G T G C A A C G T A C T G C G T A A C G T A C T G A C T G C G T A A C G T A C T G A C T G A C G T A C G T
A C G T A C G T A C G T C G A T C T A G T C G A A G C T C G A T C T G A C G T A A G C T A C T G C T A G A T G C G A T C

PBX1/MA0070.1/Jaspar

Match Rank:5
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:GGATGATGGATGG
-TTTGATTGATGN
 C T A G A C T G T G C A A C G T A C T G C G T A A C G T A C T G A C T G C G T A A C G T A C T G A C T G
A C G T C G A T G C A T C A G T A C T G G T C A C G A T A C G T A C T G C G T A A C G T A C T G C A T G

PH0134.1_Pbx1/Jaspar

Match Rank:6
Score:0.65
Offset:-4
Orientation:reverse strand
Alignment:----GGATGATGGATGG
NNNNNATTGATGNGTGN
 A C G T A C G T A C G T A C G T C T A G A C T G T G C A A C G T A C T G C G T A A C G T A C T G A C T G C G T A A C G T A C T G A C T G
A C G T A C T G G C A T C G A T C A G T G C T A C G A T A C G T A C T G C G T A G A C T A C T G C A T G C T A G G C A T T C A G C T G A

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:7
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:GGATGATGGATGG--
---TGATTTATGGCC
 C T A G A C T G T G C A A C G T A C T G C G T A A C G T A C T G A C T G C G T A A C G T A C T G A C T G A C G T A C G T
A C G T A C G T A C G T C G A T C T A G C G T A C G A T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:8
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:GGATGATGGATGG--
---TGATTTATGGCC
 C T A G A C T G T G C A A C G T A C T G C G T A A C G T A C T G A C T G C G T A A C G T A C T G A C T G A C G T A C G T
A C G T A C G T A C G T C G A T C T A G G C T A C G A T C A G T A C G T G T C A A G C T C A T G T C A G A G T C A G T C

Hoxc9/MA0485.1/Jaspar

Match Rank:9
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:GGATGATGGATGG--
--NTGATTTATGGCC
 C T A G A C T G T G C A A C G T A C T G C G T A A C G T A C T G A C T G C G T A A C G T A C T G A C T G A C G T A C G T
A C G T A C G T T C A G C G A T C T A G C G T A A C G T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C

PB0144.1_Lef1_2/Jaspar

Match Rank:10
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-GGATGATGGATGG--
NNANTGATTGATNTTN
 A C G T C T A G A C T G T G C A A C G T A C T G C G T A A C G T A C T G A C T G C G T A A C G T A C T G A C T G A C G T A C G T
G C A T C G T A T C G A C A T G G A C T C T A G G T C A G A C T C G A T T A C G C G T A C G A T A T G C A G C T G C A T A T G C