Information for 12-TGCTGTCCACACTAGA (Motif 27)

A C G T C T A G A G T C A C G T A T C G C G A T A G T C G T A C G C T A A T G C C G T A A T G C A G C T C G T A A C T G C G T A
Reverse Opposite:
A C G T G T A C G C A T C T G A A T C G C G A T T A C G C A G T C A T G A C T G G C T A A T G C C G T A T A C G A G T C C G T A
p-value:1e-7
log p-value:-1.690e+01
Information Content per bp:1.713
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif1.34%
Number of Background Sequences with motif16.3
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets45.1 +/- 17.8bp
Average Position of motif in Background44.0 +/- 32.5bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.33
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer

Match Rank:1
Score:0.50
Offset:3
Orientation:reverse strand
Alignment:TGCTGTCCACACTAGA--
---TGWCCTCARNTGACC
 A C G T C T A G A G T C A C G T A T C G C G A T A G T C G T A C G C T A A T G C C G T A A T G C A G C T C G T A A C T G C G T A A C G T A C G T
A C G T A C G T A C G T G C A T T A C G C G T A G T A C A G T C G A C T A G T C T C G A T C A G T C G A C G A T T C A G T G C A G T A C G A T C

NRL/MA0842.1/Jaspar

Match Rank:2
Score:0.49
Offset:-4
Orientation:forward strand
Alignment:----TGCTGTCCACACTAGA
AATTTGCTGAC---------
 A C G T A C G T A C G T A C G T A C G T C T A G A G T C A C G T A T C G C G A T A G T C G T A C G C T A A T G C C G T A A T G C A G C T C G T A A C T G C G T A
C G T A C G T A G C A T G C A T G A C T T C A G G T A C G C A T C A T G G C T A A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

GATA1::TAL1/MA0140.2/Jaspar

Match Rank:3
Score:0.49
Offset:2
Orientation:reverse strand
Alignment:TGCTGTCCACACTAGA----
--CTGNNNNNNNCAGATAAG
 A C G T C T A G A G T C A C G T A T C G C G A T A G T C G T A C G C T A A T G C C G T A A T G C A G C T C G T A A C T G C G T A A C G T A C G T A C G T A C G T
A C G T A C G T T A G C C G A T A C T G A G T C C G A T A G T C A T G C C A G T A G T C T G C A T A G C C G T A A C T G C G T A A C G T C G T A C T G A A C T G

GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer

Match Rank:4
Score:0.49
Offset:-1
Orientation:forward strand
Alignment:-TGCTGTCCACACTAGA---
CNGCTGNNGNNNNCAGATAA
 A C G T A C G T C T A G A G T C A C G T A T C G C G A T A G T C G T A C G C T A A T G C C G T A A T G C A G C T C G T A A C T G C G T A A C G T A C G T A C G T
T G A C C T A G A C T G T A G C C G A T A C T G A T G C C A T G A T C G A T C G A T C G T A G C C T G A T A G C G C T A A C T G C G T A A G C T C G T A C T G A

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:5
Score:0.49
Offset:3
Orientation:reverse strand
Alignment:TGCTGTCCACACTAGA
---TGACCTYA-----
 A C G T C T A G A G T C A C G T A T C G C G A T A G T C G T A C G C T A A T G C C G T A A T G C A G C T C G T A A C T G C G T A
A C G T A C G T A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A A C G T A C G T A C G T A C G T A C G T

Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer

Match Rank:6
Score:0.48
Offset:1
Orientation:reverse strand
Alignment:TGCTGTCCACACTAGA
-SCTGTCARCACC---
 A C G T C T A G A G T C A C G T A T C G C G A T A G T C G T A C G C T A A T G C C G T A A T G C A G C T C G T A A C T G C G T A
A C G T T A G C G A T C C G A T C A T G G C A T A G T C G T C A C T G A A G T C C T G A T A G C A G T C A C G T A C G T A C G T

Rarg(var.2)/MA0860.1/Jaspar

Match Rank:7
Score:0.47
Offset:3
Orientation:reverse strand
Alignment:TGCTGTCCACACTAGA----
---TGACCTTTCGTGACCTT
 A C G T C T A G A G T C A C G T A T C G C G A T A G T C G T A C G C T A A T G C C G T A A T G C A G C T C G T A A C T G C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A G C T C T A G C G T A T G A C G T A C A G C T A G C T A G C T T A G C C A T G A G C T A C T G T G C A G T A C T A G C A G C T G A C T

SMAD3/MA0795.1/Jaspar

Match Rank:8
Score:0.47
Offset:8
Orientation:forward strand
Alignment:TGCTGTCCACACTAGA--
--------CGTCTAGACA
 A C G T C T A G A G T C A C G T A T C G C G A T A G T C G T A C G C T A A T G C C G T A A T G C A G C T C G T A A C T G C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A T C C T A G C G A T T A G C A G C T T G C A A T C G G T C A G A T C G C T A

PB0026.1_Gm397_1/Jaspar

Match Rank:9
Score:0.46
Offset:-1
Orientation:forward strand
Alignment:-TGCTGTCCACACTAGA
CAGATGTGCACATACGT
 A C G T A C G T C T A G A G T C A C G T A T C G C G A T A G T C G T A C G C T A A T G C C G T A A T G C A G C T C G T A A C T G C G T A
G T A C G C T A C A T G C G T A C G A T T A C G A G C T C T A G A G T C C T G A A T G C G C T A A G C T G T C A G T A C C A T G G A C T

PB0104.1_Zscan4_1/Jaspar

Match Rank:10
Score:0.46
Offset:-1
Orientation:forward strand
Alignment:-TGCTGTCCACACTAGA
TACATGTGCACATAAAA
 A C G T A C G T C T A G A G T C A C G T A T C G C G A T A G T C G T A C G C T A A T G C C G T A A T G C A G C T C G T A A C T G C G T A
C A G T G T C A T G A C C T G A C G A T T C A G A G C T C T A G A G T C C T G A A G T C G C T A A G C T G C T A G C T A C G T A G T C A