Information for 1-ATGATGCCTGCATAAG (Motif 2)

C G T A G C A T C T A G T C G A C G A T C T A G A T G C G T A C C G A T A T C G A G T C G T C A A C G T C G T A C G T A C T A G
Reverse Opposite:
G A T C A C G T G A C T T G C A A C G T A C T G T A G C C G T A C A T G A T C G A G T C C G T A A G C T A G T C C G T A G A C T
p-value:1e-12
log p-value:-2.924e+01
Information Content per bp:1.706
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif1.34%
Number of Background Sequences with motif2.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets60.4 +/- 29.1bp
Average Position of motif in Background44.1 +/- 14.1bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0148.1_Pou3f3/Jaspar

Match Rank:1
Score:0.55
Offset:2
Orientation:forward strand
Alignment:ATGATGCCTGCATAAG---
--AAAATATGCATAATAAA
 C G T A G C A T C T A G T C G A C G A T C T A G A T G C G T A C C G A T A T C G A G T C G T C A A C G T C G T A C G T A C T A G A C G T A C G T A C G T
A C G T A C G T G C T A G C T A C T A G C G T A G A C T G C T A G A C T C A T G G T A C C T G A C G A T C G T A G C T A C A G T C T G A C G T A C G T A

PH0014.1_Cphx/Jaspar

Match Rank:2
Score:0.54
Offset:0
Orientation:forward strand
Alignment:ATGATGCCTGCATAAG
ATGATCGAATCAAA--
 C G T A G C A T C T A G T C G A C G A T C T A G A T G C G T A C C G A T A T C G A G T C G T C A A C G T C G T A C G T A C T A G
C T G A C G A T T C A G C G T A C A G T A T G C T A C G T G C A G T C A G A C T A G T C C G T A T C G A G C T A A C G T A C G T

BATF3/MA0835.1/Jaspar

Match Rank:3
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:ATGATGCCTGCATAAG
-TGATGACGTCATCA-
 C G T A G C A T C T A G T C G A C G A T C T A G A T G C G T A C C G A T A T C G A G T C G T C A A C G T C G T A C G T A C T A G
A C G T G A C T C A T G T C G A C G A T C A T G G T C A A G T C A C T G A C G T A G T C C G T A A G C T G A T C C T G A A C G T

OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:4
Score:0.52
Offset:0
Orientation:forward strand
Alignment:ATGATGCCTGCATAAG
ATGAATWATTCATGA-
 C G T A G C A T C T A G T C G A C G A T C T A G A T G C G T A C C G A T A T C G A G T C G T C A A C G T C G T A C G T A C T A G
G T C A A C G T C T A G G T C A C G T A G C A T C G T A C G T A G C A T C A G T A G T C C G T A C A G T C T A G C T G A A C G T

PB0145.1_Mafb_2/Jaspar

Match Rank:5
Score:0.52
Offset:4
Orientation:forward strand
Alignment:ATGATGCCTGCATAAG---
----CAATTGCAAAAATAT
 C G T A G C A T C T A G T C G A C G A T C T A G A T G C G T A C C G A T A T C G A G T C G T C A A C G T C G T A C G T A C T A G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G T A C T C G A C G T A A C G T A C G T A C T G G A T C C T G A C G T A G C T A C G T A C G T A G C A T C T G A G C A T

OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer

Match Rank:6
Score:0.51
Offset:0
Orientation:forward strand
Alignment:ATGATGCCTGCATAAG
ATGCATWATGCATRW-
 C G T A G C A T C T A G T C G A C G A T C T A G A T G C G T A C C G A T A T C G A G T C G T C A A C G T C G T A C G T A C T A G
C G T A A C G T A C T G G T A C C G T A A C G T C G T A C G T A A C G T A C T G A G T C C G T A A C G T C T G A G C A T A C G T

DMRT3/MA0610.1/Jaspar

Match Rank:7
Score:0.51
Offset:-1
Orientation:reverse strand
Alignment:-ATGATGCCTGCATAAG
NTTGATACATT------
 A C G T C G T A G C A T C T A G T C G A C G A T C T A G A T G C G T A C C G A T A T C G A G T C G T C A A C G T C G T A C G T A C T A G
C G T A C G A T A C G T A C T G G C T A A C G T C G T A A G T C C G T A C G A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer

Match Rank:8
Score:0.51
Offset:6
Orientation:reverse strand
Alignment:ATGATGCCTGCATAAG
------VTTRCATAAY
 C G T A G C A T C T A G T C G A C G A T C T A G A T G C G T A C C G A T A T C G A G T C G T C A A C G T C G T A C G T A C T A G
A C G T A C G T A C G T A C G T A C G T A C G T T C A G G A C T A C G T C T G A G A T C T C G A G A C T G T C A C T G A A G T C

PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer

Match Rank:9
Score:0.50
Offset:-2
Orientation:reverse strand
Alignment:--ATGATGCCTGCATAAG
AGATGCTRCTRCCHT---
 A C G T A C G T C G T A G C A T C T A G T C G A C G A T C T A G A T G C G T A C C G A T A T C G A G T C G T C A A C G T C G T A C G T A C T A G
C G T A T C A G T G C A C G A T C T A G T G A C G A C T C T A G A G T C G A C T C T A G A G T C G A T C G C T A G A C T A C G T A C G T A C G T

Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer

Match Rank:10
Score:0.50
Offset:0
Orientation:forward strand
Alignment:ATGATGCCTGCATAAG
MTGATGCAAT------
 C G T A G C A T C T A G T C G A C G A T C T A G A T G C G T A C C G A T A T C G A G T C G T C A A C G T C G T A C G T A C T A G
T G C A A G C T C A T G C G T A A G C T A C T G G A T C G T C A C G T A A G C T A C G T A C G T A C G T A C G T A C G T A C G T