Information for 5-GTGTTACTGWCCA (Motif 12)

C T A G A C G T A C T G A G C T A G C T G T C A A G T C A C G T A T C G C G T A A G T C A G T C C G T A
Reverse Opposite:
C G A T A C T G A C T G C G A T A T G C C G T A A C T G C A G T C T G A C T G A A G T C C G T A A G T C
p-value:1e-11
log p-value:-2.597e+01
Information Content per bp:1.855
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.78%
Number of Background Sequences with motif14.0
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets40.2 +/- 30.2bp
Average Position of motif in Background31.9 +/- 18.0bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:1
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:GTGTTACTGWCCA
CTGTTCCTGG---
 C T A G A C G T A C T G A G C T A G C T G T C A A G T C A C G T A T C G C G T A A G T C A G T C C G T A
T A G C C G A T A T C G A C G T A C G T A G T C A G T C G C A T C A T G A T C G A C G T A C G T A C G T

FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer

Match Rank:2
Score:0.60
Offset:0
Orientation:forward strand
Alignment:GTGTTACTGWCCA-
AGGTCANTGACCTN
 C T A G A C G T A C T G A G C T A G C T G T C A A G T C A C G T A T C G C G T A A G T C A G T C C G T A A C G T
T C G A C A T G C A T G A C G T A T G C T C G A C T G A A G C T T A C G T G C A G T A C G A T C A G C T A G T C

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:3
Score:0.59
Offset:7
Orientation:reverse strand
Alignment:GTGTTACTGWCCA
-------TGACCT
 C T A G A C G T A C T G A G C T A G C T G T C A A G T C A C G T A T C G C G T A A G T C A G T C C G T A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A T G G C T A G T A C G T A C G A C T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:4
Score:0.57
Offset:7
Orientation:reverse strand
Alignment:GTGTTACTGWCCA--
-------TGACCTYA
 C T A G A C G T A C T G A G C T A G C T G T C A A G T C A C G T A T C G C G T A A G T C A G T C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:5
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:GTGTTACTGWCCA
-TGACCTTGACCT
 C T A G A C G T A C T G A G C T A G C T G T C A A G T C A C G T A T C G C G T A A G T C A G T C C G T A
A C G T G A C T T C A G T G C A A G T C A G T C G A C T A C G T T A C G C G T A G T A C G A T C G A C T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:6
Score:0.55
Offset:7
Orientation:reverse strand
Alignment:GTGTTACTGWCCA--
-------TGACCYCT
 C T A G A C G T A C T G A G C T A G C T G T C A A G T C A C G T A T C G C G T A A G T C A G T C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T T C A G T G C A G T A C T G A C A G C T A G T C A G C T

PB0050.1_Osr1_1/Jaspar

Match Rank:7
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--GTGTTACTGWCCA-
TNNTGCTACTGTNNNN
 A C G T A C G T C T A G A C G T A C T G A G C T A G C T G T C A A G T C A C G T A T C G C G T A A G T C A G T C C G T A A C G T
G A C T C G A T A C G T C G A T T C A G A G T C A G C T G C T A A G T C A G C T C T A G A C G T C G T A G C T A C G T A C G A T

RORA/MA0071.1/Jaspar

Match Rank:8
Score:0.54
Offset:7
Orientation:reverse strand
Alignment:GTGTTACTGWCCA----
-------TGACCTTGAT
 C T A G A C G T A C T G A G C T A G C T G T C A A G T C A C G T A T C G C G T A A G T C A G T C C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G C G T A A G T C A G T C A G C T G C A T A C T G C G T A G C A T

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.53
Offset:6
Orientation:reverse strand
Alignment:GTGTTACTGWCCA---
------CTGACCTTTG
 C T A G A C G T A C T G A G C T A G C T G T C A A G T C A C G T A T C G C G T A A G T C A G T C C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A T G C A C G T T A C G T G C A G T A C A G T C G A C T A G C T A C G T T C A G

PH0073.1_Hoxc9/Jaspar

Match Rank:10
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-GTGTTACTGWCCA--
NNAATTAATGACCNNN
 A C G T C T A G A C G T A C T G A G C T A G C T G T C A A G T C A C G T A T C G C G T A A G T C A G T C C G T A A C G T A C G T
T G C A G C A T C T G A C T G A C G A T A C G T C G T A C G T A A G C T A C T G C T G A A G T C G A T C A G C T G T A C A G T C