Information for 12-AGCATRCATC (Motif 44)

C T G A C A T G A T G C C G T A A C G T C T A G A G T C G T C A A C G T A T G C
Reverse Opposite:
A T C G C G T A A C G T C T A G A G T C G T C A G C A T T A C G G T A C G A C T
p-value:1e-6
log p-value:-1.505e+01
Information Content per bp:1.752
Number of Target Sequences with motif27.0
Percentage of Target Sequences with motif4.46%
Number of Background Sequences with motif609.0
Percentage of Background Sequences with motif1.42%
Average Position of motif in Targets55.4 +/- 28.3bp
Average Position of motif in Background52.9 +/- 39.9bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.11
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer

Match Rank:1
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:AGCATRCATC--
--ATTGCATCAK
 C T G A C A T G A T G C C G T A A C G T C T A G A G T C G T C A A C G T A T G C A C G T A C G T
A C G T A C G T T C G A A C G T A C G T C T A G A G T C T C G A G C A T G T A C C T G A A C G T

Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer

Match Rank:2
Score:0.66
Offset:2
Orientation:forward strand
Alignment:AGCATRCATC--
--ATTGCATCAT
 C T G A C A T G A T G C C G T A A C G T C T A G A G T C G T C A A C G T A T G C A C G T A C G T
A C G T A C G T T C G A G C A T A C G T C T A G G T A C T C G A G C A T T G A C T C G A A C G T

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:3
Score:0.62
Offset:0
Orientation:forward strand
Alignment:AGCATRCATC--
GYCATCMATCAT
 C T G A C A T G A T G C C G T A A C G T C T A G A G T C G T C A A C G T A T G C A C G T A C G T
T A C G G A C T T G A C C G T A A C G T G A T C G T C A C G T A A C G T A T G C C G T A G A C T

PH0134.1_Pbx1/Jaspar

Match Rank:4
Score:0.60
Offset:1
Orientation:forward strand
Alignment:AGCATRCATC--------
-TCACCCATCAATAAACA
 C T G A C A T G A T G C C G T A A C G T C T A G A G T C G T C A A C G T A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T G A C T A G T C C G T A G A T C G T A C T G A C C T G A C G A T G T A C G T C A G C T A C G A T G T A C G C T A C G A T T G A C T G C A

DMRT3/MA0610.1/Jaspar

Match Rank:5
Score:0.60
Offset:2
Orientation:forward strand
Alignment:AGCATRCATC---
--AATGTATCAAT
 C T G A C A T G A T G C C G T A A C G T C T A G A G T C G T C A A C G T A T G C A C G T A C G T A C G T
A C G T A C G T G T C A C G T A C G A T A C T G A C G T C G T A C G A T A G T C G T C A C G T A A C G T

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:6
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-AGCATRCATC
GAATATTCAT-
 A C G T C T G A C A T G A T G C C G T A A C G T C T A G A G T C G T C A A C G T A T G C
T C A G G T C A C G T A A G C T C G T A G A C T C A G T A T G C T C G A C G A T A C G T

ATF4/MA0833.1/Jaspar

Match Rank:7
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:AGCATRCATC----
-TATTGCATCATCC
 C T G A C A T G A T G C C G T A A C G T C T A G A G T C G T C A A C G T A T G C A C G T A C G T A C G T A C G T
A C G T A C G T T C G A C G A T C A G T C T A G G T A C T C G A C G A T G A T C G T C A A C G T G T A C G A T C

PB0163.1_Six6_2/Jaspar

Match Rank:8
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---AGCATRCATC----
ANNNGGATATATCCNNN
 A C G T A C G T A C G T C T G A C A T G A T G C C G T A A C G T C T A G A G T C G T C A A C G T A T G C A C G T A C G T A C G T A C G T
G T C A C T A G C T A G A G T C T C A G C A T G T C G A A C G T T G C A A G C T C T G A A G C T T G A C A T G C T A G C G C T A A C G T

Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:9
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---AGCATRCATC
TGAATTATGCAT-
 A C G T A C G T A C G T C T G A C A T G A T G C C G T A A C G T C T A G A G T C G T C A A C G T A T G C
C G A T C T A G G T C A G C T A C G A T G C A T G C T A C G A T C A T G G A T C G C T A C G A T A C G T

PH0148.1_Pou3f3/Jaspar

Match Rank:10
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--AGCATRCATC-----
AAAATATGCATAATAAA
 A C G T A C G T C T G A C A T G A T G C C G T A A C G T C T A G A G T C G T C A A C G T A T G C A C G T A C G T A C G T A C G T A C G T
G C T A G C T A C T A G C G T A G A C T G C T A G A C T C A T G G T A C C T G A C G A T C G T A G C T A C A G T C T G A C G T A C G T A