Information for 8-TGGTTAGAATGSA (Motif 5)

C A G T C T A G T C A G C G A T A C G T C G T A T A C G C G T A T C G A C G A T C T A G A T C G G T C A
Reverse Opposite:
A C G T A T G C G A T C C G T A A C G T G C A T A T G C C G A T C G T A C G T A A G T C A G T C G T C A
p-value:1e-12
log p-value:-2.799e+01
Information Content per bp:1.732
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif1.68%
Number of Background Sequences with motif43.6
Percentage of Background Sequences with motif0.09%
Average Position of motif in Targets56.6 +/- 25.0bp
Average Position of motif in Background49.0 +/- 27.7bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

LIN54/MA0619.1/Jaspar

Match Rank:1
Score:0.63
Offset:2
Orientation:forward strand
Alignment:TGGTTAGAATGSA
--ATTTGAATT--
 C A G T C T A G T C A G C G A T A C G T C G T A T A C G C G T A T C G A C G A T C T A G A T C G G T C A
A C G T A C G T C G T A A C G T A C G T A G C T C T A G C G T A C G T A G A C T G A C T A C G T A C G T

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:2
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-TGGTTAGAATGSA
BTVATTWGCATA--
 A C G T C A G T C T A G T C A G C G A T A C G T C G T A T A C G C G T A T C G A C G A T C T A G A T C G G T C A
A G T C C A G T T G C A G T C A A C G T A G C T C G A T T C A G G T A C C G T A A C G T C T G A A C G T A C G T

FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer

Match Rank:3
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--TGGTTAGAATGSA
CBTGTTTAYAWW---
 A C G T A C G T C A G T C T A G T C A G C G A T A C G T C G T A T A C G C G T A T C G A C G A T C T A G A T C G G T C A
A T G C A C G T A C G T C T A G A C G T A C G T A C G T C G T A A G T C G C T A C G A T G C A T A C G T A C G T A C G T

PB0174.1_Sox30_2/Jaspar

Match Rank:4
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--TGGTTAGAATGSA-
TAAGATTATAATACGG
 A C G T A C G T C A G T C T A G T C A G C G A T A C G T C G T A T A C G C G T A T C G A C G A T C T A G A T C G G T C A A C G T
G A C T G T C A C G T A A C T G G T C A C G A T A G C T G T C A A C G T T C G A C G T A C A G T T G C A T A G C T A C G T A C G

Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer

Match Rank:5
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-TGGTTAGAATGSA
CTCATTTGCATW--
 A C G T C A G T C T A G T C A G C G A T A C G T C G T A T A C G C G T A T C G A C G A T C T A G A T C G G T C A
A G T C G C A T T G A C G T C A A C G T A G C T C G A T T C A G T G A C G C T A G C A T C G T A A C G T A C G T

Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:6
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---TGGTTAGAATGSA
ATTTGCATACAATGG-
 A C G T A C G T A C G T C A G T C T A G T C A G C G A T A C G T C G T A T A C G C G T A T C G A C G A T C T A G A T C G G T C A
G T C A A G C T G A C T C G A T T C A G T G A C C G T A G A C T C G T A A T G C C G T A C G T A C G A T C T A G T C A G A C G T

PB0028.1_Hbp1_1/Jaspar

Match Rank:7
Score:0.57
Offset:1
Orientation:forward strand
Alignment:TGGTTAGAATGSA----
-ACTATGAATGAATGAT
 C A G T C T A G T C A G C G A T A C G T C G T A T A C G C G T A T C G A C G A T C T A G A T C G G T C A A C G T A C G T A C G T A C G T
A C G T G C T A G T A C C G A T G C T A G C A T T A C G C G T A C G T A C G A T A C T G C T G A T C G A G A C T C A T G C T G A A G C T

PB0194.1_Zbtb12_2/Jaspar

Match Rank:8
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--TGGTTAGAATGSA
TATCATTAGAACGCT
 A C G T A C G T C A G T C T A G T C A G C G A T A C G T C G T A T A C G C G T A T C G A C G A T C T A G A T C G G T C A
G C A T T G C A G A C T A T G C T C G A C G A T C A G T C T G A C A T G G C T A G T C A G T A C A C T G A G T C C G A T

DUX4/MA0468.1/Jaspar

Match Rank:9
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:TGGTTAGAATGSA
TGATTAAATTA--
 C A G T C T A G T C A G C G A T A C G T C G T A T A C G C G T A T C G A C G A T C T A G A T C G G T C A
C G A T C T A G C G T A A C G T C A G T T C G A T C G A C T G A A C G T A G C T C G T A A C G T A C G T

PB0079.1_Sry_1/Jaspar

Match Rank:10
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--TGGTTAGAATGSA-
NANTATTATAATTNNN
 A C G T A C G T C A G T C T A G T C A G C G A T A C G T C G T A T A C G C G T A T C G A C G A T C T A G A T C G G T C A A C G T
A C T G G C T A G C T A G A C T C G T A C G A T C G A T C T G A G A C T C G T A C G T A C G A T C G A T G T C A C G A T T G C A